barSeed - Barley Seed Development Database

Probe CUST_23219_PI390587928

Source Contig U35_10703

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23219_PI390587928	Hv_44K_v2	GATGGGCAACTCCGCCATGGTCGTCACCATGCTGCTCTCCCTCTGCGTCCTCACCTTCAT	103	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70646.2	3826	2e-24	1586 - 1645	100	60 / 60	plus	ABC04687 ABC12043
MLOC	MLOC_70646.1	3772	2e-24	1586 - 1645	100	60 / 60	plus	ABC04687 ABC12043
JLOC1	JLOC1_46891.1	3550	8e-25	1357 - 1416	100	60 / 60	plus
Harvest21	ABC46201	293	3e-25	76 - 135	100	60 / 60	plus
Harvest35	U35_10703	319	3e-25	104 - 163	100	60 / 60	plus

Contig Sequence (319 bp)

>U35_10703 319 Hv_44K_v2
GCGCTGCGCTGCCGCTCCCACTCCATCTCCGGCGTGCCAGGCCACCTCCTCCACCACCGG
CGGGCGCCATGAAGCAGCCGAGGTCGCGGCAGGAGCCGCGCCGGATGGGCAACTCCGCCA
TGGTCGTCACCATGCTGCTCTCCCTCTGCGTCCTCACCTTCATCAAGGCCCGCTACTGCT
CCACCCCGTACCCCAACAAGCCGGCGCCGCTGCTGGACCTGGAGGCGGGGATCGACGAGG
ACTACGACAGCAGCCGGTACAAGATCTCCGGCCCCATCGGGGAGGAGGAGTTCGACCCCA
GCCGCCCCACCTGCTACAA

Homology of Contig U35_10703 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None