barSeed - Barley Seed Development Database

Probe CUST_23216_PI390587928

Source Contig U35_10706

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23216_PI390587928	Hv_44K_v2	ATATCACCGTTCGCATCACCTGTCAAGAGGAAAGAACGATCTCTATCTTCACTGACAGTC	471	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62283.2	1456	7e-23	1081 - 1140	98	59 / 60	minus	ABC15918
MLOC	MLOC_62283.1	1770	7e-23	1154 - 1213	98	59 / 60	minus	ABC15918
JLOC1	JLOC1_40747.1	1882	4e-23	505 - 564	98	59 / 60	plus
Harvest21	ABC25903	535	3e-25	472 - 531	100	60 / 60	plus
Harvest35	U35_10706	535	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_10706 535 Hv_44K_v2
GTCGCTGTCGCAGAGGAGGTGGGTTCCAGGTTCAGTTCGTGCTCGCGTCCGGTCCGGGGG
GGAAGGGGCGGAGCTAGCTGCGAGGAGAAGCCCTCGCCGGCCGGCATGCAGGACGCCGTG
CTGGCGTGCCCCGCGCCTTCCGACGGAGGTGCGGGAGGAGGAGACGGCGAGGTCGGCAGC
GCGGGCCCGGGCGTCGTGATGGTGAAGCGCGCGGCCCTGGTGGAGCGCCTCACCTGCCCG
CTCTGCCGCCGCCTGCTCCGCGACGCCGCCACCATCACCGAGTGCCTCCACACCTTTTGC
AGAAAGTGCATATCTAAGGAGTTTATCGATAAGGAGATCTGCTACTGCCCTACTTGCAAC
ATTGATTTAGGCTGTGCTCCAGAGGAGAAACTCAGAGTTGATCACAGCCTACAATATGTG
AGGTCAAAGATATTTCCTTCTAAAAGACGGAAGGTTGTGGACCAAGAAGCCATATCACCG
TTCGCATCACCTGTCAAGAGGAAAGAACGATCTCTATCTTCACTGACAGTCCATG

Homology of Contig U35_10706 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g05390.1	386	1e-53
Arabidopsis v10	None