barSeed - Barley Seed Development Database

Probe CUST_23212_PI390587928

Source Contig U35_10714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23212_PI390587928	Hv_44K_v2	AACAAGCTGCACTCACATATATTGCCAAACCTGCATCCTGAAAATCCTCAAGAGCGCTAG	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25126.1	1334	2e-24	956 - 1015	100	60 / 60	minus	ABC47786
JLOC1	JLOC1_17215.1	1328	8e-25	320 - 379	100	60 / 60	plus
Harvest21	ABC23216	878	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_10714	878	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (878 bp)

>U35_10714 878 Hv_44K_v2
AATGGTTCCGGGTCATTCTGGATGAGGCCCATATTATCAAGAACTCTGCAGCTCTGCAGA
CTCGGGCGGTGACTGCCTTGAATGCACAGAGGCGCTGGGTAGTCACAGGGACGCCAATTC
AGAACAGCTCATTGGATTTGTACCCGCTTATGGCGTTTTTGAAGTTTGAGCCTTTCTCAG
TCAAGAGCTACTGGCAGAGCTTAATCCAGCATCCCCTGGAGAAAGGGAATAAGGCTGGCT
TGTCACGATTACAAAACCTACTAGGTGCTATCTCATTGCGCAGAACCAAAGAAACAGAGT
GTGGAAGCAAGAGTGTGGTTGCCATTCCACCTAAAACTGTTGTAGCATGTTACATTGAGC
TTTCTGCAGAGGAAAGGGAGTGTTATGATCAGATGGAATCGGAAGGGAGAAACAAAATGA
TGGAGTTTGGTGACAGAGATTCGATACTGCGTAATTACTCAACCGTGCTTTTTCTGATTC
TGAGGCTACGCCAGCTCTGCAATGATGTAGCACTGTGCCCTTTTGACATTAAATCATGGC
TTCCTGCTAACACCCTTGAAGATGTGTCCAATAGCCCCGAGTTGTTGAAGAAGCTTGCCT
CATTGGTTGCTGATGGAGAGGACTTTGACTGTCCAATTTGCTTGTCTCCTCCATCTAAAA
CTATTATAACAAGCTGCACTCACATATATTGCCAAACCTGCATCCTGAAAATCCTCAAGA
GCGCTAGTTCCCGCTGTCCGATATGTCGGCGCTCGCTATCGAAAGAAGACCTCTTTATTG
CTCCGGCGGTACAGCATCCTGATGACGATGACTCGGGCAGTCTTGACTCTGACAAACCTC
TCTCTTCCAAGGAGCAAGCCCTGCTGGAGCTACTGAAT

Homology of Contig U35_10714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44800.1	822	4e-152	protein\|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed
Brachypodium v1_2	Bradi1g19820.1	829	2e-161
Arabidopsis v10	AT5G05130.1	862	4e-105	DNA/RNA helicase protein \| chr5:1512173-1514918 FORWARD LENGTH=862