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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_23210_PI390587928Hv_44K_v2GCTCGGGATCATATCTTCTTGGTGTGTATCAGAAATAAAGAAGTTTGCTTGGTGTAGTAA783GeneList: darkgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6971.2993.0321.2330.9630.858
Raw 2.56913.55529.94617.9963.4292.706



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_31788.14855e-22397 - 4589760 / 62plus
Harvest35U35_107168583e-25784 - 84310060 / 60plus



Contig Sequence (858 bp)

>U35_10716 858 Hv_44K_v2
GAAAGAGTCAACTCATCATAGACACCTCCTACCATCTTTGTGGGAGCCAAAATCCTAGCC
ATGGCCAGTTCTAGCCGTGTCCTGTCCGTCATTTTGGTCCTGCATTTCGTTCTATCCATG
GCCAGTCCATCCCTGTCTTGCGTTATTCCTTGTGAGTCTGAGATAAACTTGCGCTTGTAC
TTGCACCAAATCGCCGCTGGATCCGGCACAAACCAGGTTGCAATTGTTGCCTCCAGCCAA
CCAGCCGGGTTTGGTACGACGGCTGTTAACGACTGGACTGTGATTGATGGACCAAACCCC
GGTACTGCCACCATTGTTGCCCGTACCAAAGGCATGCATGTGCAGGCTGATGTAGGCGGT
CCAGGCTGGTTCAACTACTTCAGCATGGTGTTCGAGGACGCCAGGCGCCGTGGATCATCA
TTTGAGGTAATGGGGATGAACAGAGCTCAAGAAGGCGAGATGGCCATTATTGGTGGGACT
GGAGAGTTTGCTATGGCACGTGGGACCATCAAGTATAGAGCACTCGCCAACCCCCCTCCG
GGTCAAAGTATTAAAGAGCTCAATATTCATGCATTCTACGTCAAACCAGCTGGTACTATA
GCTGGCCCTACCATCCAGTAATACGTTTGAAAATTATGTGGACGACCACGATGGGTAGCT
GTGGAATGATCCTGTCAATGTTTTTCTTTTTTAATAATCCGTGGATCTCTAGCCAGTGAT
ATTCCATCAATCCAAAGATCCATGTCCGACTGTTGTTGTTTTAAGATGTATGTTTGGTTT
TGTGCTCGGGATCATATCTTCTTGGTGTGTATCAGAAATAAAGAAGTTTGCTTGGTGTAG
TAAAAAAAAAAAAAAAAA



Homology of Contig U35_10716 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None