barSeed - Barley Seed Development Database

Probe CUST_23208_PI390587928

Source Contig U35_10718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23208_PI390587928	Hv_44K_v2	AGGTTATTGACTCTGGTCAGAGTTATCGTGGTTATTCTATTCTTCACGTGGCGCATGAGG	319	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.693	0.579	1.424	1.922	1.196	1.491
Raw	2.986	3.088	14.237	27.575	6.005	8.750

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369485	2776	2e-24	328 - 387	100	60 / 60	plus	None
MLOC	MLOC_59327.1	2558	2e-24	2298 - 2357	100	60 / 60	minus	None
JLOC1	JLOC1_38605.1	2710	8e-25	205 - 264	100	60 / 60	plus
Harvest35	U35_10718	614	3e-25	320 - 379	100	60 / 60	plus
Harvest35	U35_41600	664	4e-24	407 - 464	100	58 / 58	plus

Contig Sequence (614 bp)

>U35_10718 614 Hv_44K_v2
GTGTAATTCAGTTCACTGCTTGGCTGCTTGCTCCCCTACATCACTCTCTCACTCACTCAG
GGTGCAAGAACAGGCTCTGCTACTTGGTAGGCGGACCAAAGGTGGCATGGCTTCTCCGGC
GGCCGTCGGCGGGGGTCGTCTAGCCGACCCACTGCTGGCCGCCGACGTCGTCGTCGTCGG
CGCCAAAGACAAGTACTGGGTGCCCGCCGACGAGAGAGAGATCCTGGCGTCGCAGAGCAG
CGGCGGCGGTGAACAGGACGGCCGGGCACCGCTGCTATACCGCACGTTCAGGGTCAAGGG
CTTCTTCATCAACCTTTACAGGTTATTGACTCTGGTCAGAGTTATCGTGGTTATTCTATT
CTTCACGTGGCGCATGAGGCACCGGGACTCGGACGCGATGTGGCTGTGGTGGATCTCGGT
CGTGGGCGACCTCTGGTTCGGAGTCACCTGGCTGCTCAACCAGATCACCAAGCTCAAGCC
CAGGAAATGCGTCCCCAGCATCTCCGTCCTGAGAGAGCAGCTCGACCAGCCCGACGGCGG
CTCCGACCTGCCCCTTCTCGACGTGTTCATCAACACCGTCGACCCGGTGGACGAGCCGAT
GCTCTACACCATGA

Homology of Contig U35_10718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g45515.1	872	7e-58
Arabidopsis v10	None