barSeed - Barley Seed Development Database

Probe CUST_231_PI390587928

Source Contig U35_44032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_231_PI390587928	Hv_44K_v2	TTCCTCAGCTACGTGGTGCTCTCCTCCTGGCGCGACTCCATCGTGGTGCTTAAGAGCTGC	261	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374013	2791	2e-24	818 - 877	100	60 / 60	plus	None
MLOC	MLOC_68739.1	1306	2e-24	1165 - 1224	100	60 / 60	plus	None
MLOC	MLOC_68739.3	1366	2e-24	1267 - 1326	100	60 / 60	plus	None
JLOC1	JLOC1_45510.2	1099	8e-25	885 - 944	100	60 / 60	plus
JLOC1	JLOC1_45510.1	1257	8e-25	1043 - 1102	100	60 / 60	plus
Harvest21	ABC41447	414	3e-25	262 - 321	100	60 / 60	plus
Harvest35	U35_44032	414	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (414 bp)

>U35_44032 414 Hv_44K_v2
ACCCCATGATCTCCCGGAGCGGCAAGATGGGCCGCGTCATCTACGAGTGCGCCTCGGGGG
TTTGTGGACCAGGACGCGGCCGTGGGGGAGCTGGACGAGCTGCCGGGCGGAGCGGACTCG
TTCGAGCTGGCGGCCAGGTTCTGCTACGGCATGGCGGTGGACCTGACGGCGTCCAACATC
TCCGGGCTGCGCTGCGCCGCCGAGTACCTGGAGATGACGGAGGACCTGGAGGAGGGCAAC
CTCATCTTCAAGACGGAGGCGTTCCTCAGCTACGTGGTGCTCTCCTCCTGGCGCGACTCC
ATCGTGGTGCTTAAGAGCTGCGAGGGCCTCTCGCCGTGGGCCGAGAACCTGCAGATCGTG
CGCCGCTGCAGCGAGTCCATCGCATGGAAGGCCTGCGCCAACCCCAGGGGCGTC

Homology of Contig U35_44032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35970.1	763	8e-63	protein\|BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
Brachypodium v1_2	Bradi3g46480.1	740	7e-69
Arabidopsis v10	AT5G64330.1	746	1e-61	\| Symbols: NPH3, RPT3, JK218 \| Phototropic-responsive NPH3 family protein \| chr5:25727568-25730225 FORWARD LENGTH=746