barSeed - Barley Seed Development Database

Probe CUST_23198_PI390587928

Source Contig U35_22702

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23198_PI390587928	Hv_44K_v2	ATCTGCCACCAAAAGACAATACGAAGAATGAGACTGCCCTTGTTAAGTCTGATCAACCTT	886	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.020	1.159	1.531	1.043	0.651	0.607
Raw	35.450	54.859	70.127	71.600	15.735	16.877

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38475.3	1577	2e-24	897 - 956	100	60 / 60	minus	ABC17501
MLOC	MLOC_38475.1	1849	2e-24	1337 - 1396	100	60 / 60	minus	ABC17501
MLOC	MLOC_38475.2	2194	2e-24	1337 - 1396	100	60 / 60	minus	ABC17501
JLOC1	JLOC1_25020.2	1572	8e-25	450 - 509	100	60 / 60	plus
JLOC1	JLOC1_25020.1	1729	8e-25	607 - 666	100	60 / 60	plus
Harvest21	ABC25807	645	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_22702	949	3e-25	887 - 946	100	60 / 60	plus

Contig Sequence (949 bp)

>U35_22702 949 Hv_44K_v2
TCGAGCACTGTTGGCCTATTCTCGATTCCCCTCGATAGCATCCCCCGAATTCCACGGCCT
CCCCTCCCCTCCCCTCCCCCGAAGTCAATCAAGCTCCGGATCGCCGCTGGCCTATCCATG
GCGGGGGCGGAGGCGGTGGAGCGGGCGCACGAGCTCTACCGGGGCGGCCGCCACCGGGAG
GCGCTGGAGCTCTACTCGGCGGCGCTGGCGGCCGCCCGGGGCCACGCGCAGCGCATCGCC
CTGCACAGCAACCGCGCCGCCTGCTACCTCAAGCTCCACGACTTCCACAAGGCCGCAGAA
GAGTGCACATCTGTCCTCGAGTTGGACACCGAGCATGCTGGAGCTCTCATGCTACGTGCC
CAGACTCTTGTCACTCTAAAGGATTACCAGTCCGCTCTATTTGATGTAAACCGGCTAATT
GAGATAAATCCATCCTCTGAAGTATATCGGAACCTTCATGCGCGACTGAAGACACAGCTG
GTATGTTTCTTTAACTGAATCTGTTCTGCTAAAGTGTCAAGTCACATTGTTCTAGTTTCT
TGCATAAGCTTTACTTTGAATGCAGTGCCATCAGATTTAAGTATATCAGTACAGAGATAC
CCCTTCAATAATTCGAATGCAAGATTTAAGGAACAGAACATGGCTTTGTTGTTATGTAGT
ACTCGGAACATATCTGTTGTTTAGAAAGTAAATTTTTCGCAGTTGACATCAGTGCATCAA
CCTCTCCCTCTCTTTTTGTTGCTGTTGGATTCTCAAACAATTCTACCTGCTTAGTTTACT
GACCAAGTCTAATTCCCTATATTTGCTATAATTTGAACTTTGAAGTCACTAGCCCCGATC
CCAGAGTCTGATGAGGAGTCCCTGTATACTGAAGAAGACAAAGAAGATCTGCCACCAAAA
GACAATACGAAGAATGAGACTGCCCTTGTTAAGTCTGATCAACCTTCTG

Homology of Contig U35_22702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52580.1	320	6e-54	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g21850.3	244	2e-57
Arabidopsis v10	None