- Probe CUST_23197_PI390587928
- Source Contig U35_22703
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23197_PI390587928 | Hv_44K_v2 | AATACTCAAAGCTGTGCGAGGAGATTATGGCTCTGGGAGATGACGATCATACTCTTTTCC | 554 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.634 | 0.822 | 1.923 | 2.491 | 0.878 | 1.049 |
| Raw | 27.827 | 54.164 | 116.833 | 243.110 | 30.442 | 38.364 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68424.7 | 1695 | 2e-24 | 577 - 636 | 100 | 60 / 60 | plus | ABC20512 ABC38724 |
| MLOC | MLOC_68424.4 | 1788 | 7e-23 | 560 - 619 | 98 | 59 / 60 | plus | ABC20512 ABC38724 |
| MLOC | MLOC_68424.2 | 1679 | 7e-23 | 697 - 756 | 98 | 59 / 60 | plus | ABC20512 ABC38724 |
| MLOC | MLOC_68424.5 | 1794 | 7e-23 | 566 - 625 | 98 | 59 / 60 | plus | ABC20512 ABC38724 |
| MLOC | MLOC_68424.1 | 1714 | 7e-23 | 621 - 680 | 98 | 59 / 60 | plus | ABC20512 ABC38724 |
| MLOC | MLOC_68424.3 | 1866 | 7e-23 | 730 - 789 | 98 | 59 / 60 | plus | ABC20512 ABC38724 |
| MLOC | MLOC_68424.6 | 1825 | 7e-23 | 644 - 703 | 98 | 59 / 60 | plus | ABC20512 ABC38724 |
| JLOC1 | JLOC1_45270.3 | 1764 | 4e-23 | 585 - 644 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45270.2 | 1803 | 4e-23 | 624 - 683 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45270.1 | 1798 | 4e-23 | 619 - 678 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC17448 | 647 | 3e-25 | 544 - 603 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47151 | 603 | 1e-23 | 537 - 596 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52460 | 609 | 8e-21 | 558 - 609 | 100 | 52 / 52 | plus | |
| Harvest35 | U35_22703 | 658 | 3e-25 | 555 - 614 | 100 | 60 / 60 | plus |
Contig Sequence (658 bp)
>U35_22703 658 Hv_44K_v2 AAAGTCCCAACTCAACACGCCGCCGCCGCCGCCGCCGCCGCCGTAGCCAAGGAACCCTAG CATGTTGATGGCATCGACGGAGGAGCAAGGCTTCCTTGCATCGAGGAACCTTTCGTATCA CGGCGCTCACCACCCCGACGCTTGTGCCGATCGGGATTACCCGGAAGACCCAGGCGACCG GCAAAAGGGGGTGGAGGTTGCCGAGCTCCATGACCAGCCGGCGCGCATGAGCACTTATTC AGATCCATGTGAAATCGCCAGGCGTGCCTTGGACCTCATGTTCCCGCGGGAGGAGGACAG CGACGACGGCTGGAGCACCTGGAGCGCACGGGAGGAGGGCAGTGATTATGACGACGACGT TGATGATGGACAGGGGGAAGGAGTCGATGACTGTAGCACACAGGAGGGCAACGATTATGA AGAAGAAGAAGACGACGGCAATGCCCAAGTGACACAGGTAGCCGAGACAAACTGTCCAGG AAAGTTCTACCCCGAGAGCGAACCAGAGGCCATAGATAGCAGATGGGCATATAGTTACTC CAAACGGATTAAAGAATACTCAAAGCTGTGCGAGGAGATTATGGCTCTGGGAGATGACGA TCATACTCTTTTCCCCCCCTATCCCATGAGGGTGCTCCCTGACGCAACAGGTGTATGC
Homology of Contig U35_22703 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |