barSeed - Barley Seed Development Database

Probe CUST_23196_PI390587928

Source Contig U35_22704

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23196_PI390587928	Hv_44K_v2	CAAAAAATTACTCTCTCTGTACCGTGCTGTATTTGTATGGATAACTGGCGGTGATGTGAT	229	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17545.1	2365	2e-24	680 - 739	100	60 / 60	plus	ABC47164
Harvest21	ABC16973	1105	3e-25	230 - 289	100	60 / 60	plus
Harvest35	U35_22704	1106	3e-25	230 - 289	100	60 / 60	plus

Contig Sequence (1106 bp)

>U35_22704 1106 Hv_44K_v2
CCCCGGCCCGAAAATCCTCACAAGGGAAGGCGACCGTGTCGTCGTCAAGGTGGTTAACAA
TGTGAAGCACAACGTTACCATCCACTGGTAAATCTTTGGCCCCTTGCTCTTACTTAATTC
CATGGGCGATAATCGTACTGCTAGCTACATTTTCATAAACAAAGCCATGCTCAATTGCTC
ATCACAATTGAAGCCAGTTTTCTGAAGACCGGTCGGTTCTATCTTTCGGCAAAAAATTAC
TCTCTCTGTACCGTGCTGTATTTGTATGGATAACTGGCGGTGATGTGATGTGAGCGCAGG
CACGGGGTGAGGCAGCTGCGGACGGGGTGGTCGGACGGGCCGGCGTACATCACGCAGTGC
CCGATCCAGACGGGGCAGAGCTACGTGTACAACTTCACCGTGACGGGGCAGAGGGGCACG
CTGTTCTGGCACGCCCACGTCTCCTGGATGCGCGCCACGCTGTACGGCCCCATCGTCATC
CTCCCCAAGCTCGGCGTGCCGTTCCCGTTCCCAAAACCCTACAGAGACGTCCCCGTCGTC
TTCGGCGAATGGTTTAACGCGGATCCAGAGGCTATCATCGCACAGGCGCTGCAGACTGGT
GGAGGCCCAAACGTCTCCGAGGCCTACACCATCAACGGCCTTCCAGGCCCACTCTACAAC
TGCTCGAGCAAAGACACGTTCAAGCTGAAGGTGCAGCCAGGCATGTGGTACCTGCTCCGG
CTGATCAACGCTGCGCTCAACGATGAGCTTTTCTTCTCGATCGCCAACCACACGCTCACC
GTCGTCGACGTCGACGCCGCCTACGTGAAGCCGTTCGACACGGACGTGGTCCTGGTCACG
CCGGGGCAGACCACCAACGTGCTCCTCCTAGCCAAACCGGACGACGGCTCCCCGGCCGCC
ACGCACCTCATGCTAGCGCGCCCCTACGCCACGGGACGTGTTGGCACCTACGACAACACC
ACCGTGGCCGCCATCCTCGAGTACGCGCCGGCGGGGCACATCAAGAACCGTCCGCTCCTA
TGGCCGACGNCTACCGTGTTCAACGACACGGCGTTCGCCGCCAACTACAGCGCCAGGCTC
CGGAGCCTCGCCACCCCGGACTACCC

Homology of Contig U35_22704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16610.1	579	7e-164	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi1g66720.1	573	2e-173
Arabidopsis v10	AT5G60020.1	577	7e-130	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577