barSeed - Barley Seed Development Database

Probe CUST_23188_PI390587928

Source Contig U35_10732

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23188_PI390587928	Hv_44K_v2	CCGGGGAGACCGTGGTGGCGCGCGACGGGTGGGTGGACGTGAGGAAGCCGGCGTCGTCCG	445	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360520	1634	7e-23	452 - 511	98	59 / 60	plus	ABC35300
Harvest35	U35_10732	545	3e-25	446 - 505	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_10732 545 Hv_44K_v2
AACTGCTGTAACACTTGTCCGCGCCGATCGACCGAGTCCGAGAGCGCGCCAATGGACCCC
TGCGCCTTCGTCCGCCTCACCGTGGACCAGCTCCTCCTCAAGCTCCCCGCCGTGCCGCGC
CCCAGCTCCGGCGCCGCCGGCGTGCACCCCTCCACCTCCCCCTGCTTCTGCACGCTCCAC
CTCCAGGACCACCCTTCCTCCCTCTCCCGCACGGCGCCGCTGCCCCTAGCGTCCGCCTGC
CTCCCTTCCGGGGCCGGCGGCGGCGACCCCGTCGTGATCAGCCTCGACGTCGCCGCCGTG
CAGAGGCTCTCGGGCCGCCCCGCCGAGCTCGTCGTGACCGTGCACGCGGGCCAGTCCAAG
GGGAGCACGAGCACCGGCTGCGGCGTGGGCGCCAGCCGCGCCCTCGGGAAGGTGCGCGTG
GCCGTCGACGTGGCGCGCGCCGCCGCCGGGGAGACCGTGGTGGCGCGCGACGGGTGGGTG
GACGTGAGGAAGCCGGCGTCGTCCGCCGCGCGCGCGCAGATCCACATGCTCGTGCGCGCC
GAGCC

Homology of Contig U35_10732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53790.1	447	4e-69	protein\|stress-induced protein, putative, expressed
Brachypodium v1_2	Bradi2g49350.1	451	1e-71
Arabidopsis v10	None