barSeed - Barley Seed Development Database

Probe CUST_23178_PI390587928

Source Contig U35_22713

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23178_PI390587928	Hv_44K_v2	ATTCCTAGCAATGCATCTGATAATGTGTATTGCACATTGCTGGCTCACAGCGTGGTCCAT	853	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.899	1.873	1.112	0.836	0.187	0.201
Raw	102.381	162.452	80.715	101.636	6.809	8.909

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67234.2	1507	2e-24	1187 - 1246	100	60 / 60	plus	None
MLOC	MLOC_67234.1	2148	2e-24	1471 - 1530	100	60 / 60	plus	ABC42734
JLOC1	JLOC1_44366.2	2134	8e-25	1375 - 1434	100	60 / 60	plus
JLOC1	JLOC1_44366.1	2249	8e-25	1490 - 1549	100	60 / 60	plus
Harvest21	ABC21115	926	3e-25	854 - 913	100	60 / 60	plus
Harvest35	U35_22713	926	3e-25	854 - 913	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_22713 926 Hv_44K_v2
ATGCATCGTCACCTGTGGAGGACTCTGCCCTGGGCTTAATACTGTAATTAGGGAAATCGT
ATGCGGCTTATCTGACATGTACGGTGTCACCAAGATACTTGGGATTCAGGGTGGGTATAG
AGGTTTCTATGCTCGCAACACCATCGACTTGACTCCAAAGAGTGTAAATGACATTCACAA
AAGGGGTGGAACTATTCTTGGCTCATCACGAGGAGGCCATGACACCATGAAGATTGTTGA
TAGCATTCAGTACCGTGGTATAAATCAGGTGTATGTTATTGGTGGTGATGGTAGTCAAAG
GGGCGCAGGAGTGATTTTTGAAGAGGTTAGAAAGCGTGGTCTCAAAGTTGCTGTTGCTGG
CATTCCTAAGACCATTGATAATGACATCCCGGTAATTGATAAGTCATTTGGTTTCGACAG
TGCAGTTGAGGAAGCTCAACGTGCCATAAATGCCGCTCATGTAGAAGCTGGAAGTGCTGA
GAATGGAATAGGACTTGTAAAGCTAATGGGTCGATACAGTGGTTTCATCGCACATTATGC
CACCCTAGCAAGCAGAGATGTGGATTGTTGCTTGATTCCAGAGTCACCTTTCTATCTGGA
TGGTGAAGGTGGACTCTTCAAATATATAGAAAAGCGGCTGAAGGAGAATGGCCATATGGT
CATTGTCGTTGCGGAGGGTGCAGGGCAAAAACTTATTGTCGAAAACATGAAGGAAATGGG
GCAAGATGCTTCTGGCAACGCACTGCTTCTTGATGTTGGTCTTTGGTTGTCGCAGAAGAT
AAATGAGCATTTCAAGACAAACAAGACAACCATAAATCTGAAGTACATAGATCCTACATA
CATGATACGCGCCATTCCTAGCAATGCATCTGATAATGTGTATTGCACATTGCTGGCTCA
CAGCGTGGTCCATGGAGCCATGGCTG

Homology of Contig U35_22713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g05860.1	559	protein\|6-phosphofructokinase, putative, expressed
Brachypodium v1_2	Bradi1g49300.3	432
Arabidopsis v10	AT4G26270.1	489	\| Symbols: PFK3 \| phosphofructokinase 3 \| chr4:13301094-13304030 REVERSE LENGTH=489