barSeed - Barley Seed Development Database

Probe CUST_23173_PI390587928

Source Contig U35_22718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23173_PI390587928	Hv_44K_v2	ACTAGGTGGTTCAAGTATGAACCATGTTATGCTGCTGCGACATTCTTTTGTGATAAAAAA	831	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.772	1.584	1.328	0.835	0.329	0.340
Raw	249.059	355.475	258.484	253.705	35.248	39.581

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39006.1	1835	1e-22	1704 - 1759	100	56 / 56	plus
Harvest21	ABC18800	751	3e-25	12 - 71	100	60 / 60	minus	ABC18800
Harvest35	U35_22718	902	3e-25	832 - 891	100	60 / 60	plus

Contig Sequence (902 bp)

>U35_22718 902 Hv_44K_v2
GCACGAGGCCTTCATGCAGAAGAAAAAGACTACAAAACTGCTTACAGCTACTTCTTTGAA
GCATTCGAGGCTTTCAACGCACTGGAGGACCCAAGAGCCATCTTCAGCTTGAAGTACATG
CTCTTGTGCAAGATAATGGTTAACCAGGCTGACGATGTTGCTGGAATAATCTCATCTAAG
GCCAGCCTGAACTATGTGGGCCCTAATGTTGATGCTATGAAAGCTGTGGCTGATGCCTAC
TCTAAAAGATCTCTCAAGTTCTTTGAAACCGCCCTTCGTGATTTCAAAGCCCAGCTGGAG
GAGGACCCTATTGTTCACAGGCATCTTTCATCTCTGTATGATACCCTTCTGGAGCAGAAC
CTCTGCAGGTTGATTGAGCCCTACTCAAGGGTGGAGATTGAGCATGTCGCACAGATGATT
GAATTGCCAATTGACCATGTCGAGAAGAAGCTGTCACAGATGATCCTTGACAAAAAATTT
GCTGGTACTCTGGATCAAGGTGCTGGTTGCCTCATTATCTTTGAGGAGCTGAAAACCGAG
GCTATCTTCCCTGCCACACTTGAAACCATTTCAAATGTTGGGAAGGTTGTGGACAGTCTT
TACATGAGGTCTGCGAAGATCATGGCTTGAATGCTAGTACTCACTGTCACATGATAGTTT
TTCTGTTGGCTATGGTTTCATCTTGTTACAGTTCTATTATTGTCTTTCAAGACATTTAAT
CCTGCCAATTTGACACTTTATTCTGCATGTTGGTTTCTTAGTTAAAAATATATACCTTGC
TCACAAACAGGATAGTTGGTTGTTTCTACATGATACGCGTGTACCATGAAAACTAGGTGG
TTCAAGTATGAACCATGTTATGCTGCTGCGACATTCTTTTGTGATAAAAAAAAAAAAAAA
AA

Homology of Contig U35_22718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g37950.1	311	3e-123	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi5g11170.1	427	2e-123
Arabidopsis v10	AT1G29150.1	419	7e-113	\| Symbols: ATS9, RPN6 \| non-ATPase subunit 9 \| chr1:10181240-10182499 FORWARD LENGTH=419