barSeed - Barley Seed Development Database

Probe CUST_2316_PI390587928

Source Contig U35_23421

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2316_PI390587928	Hv_44K_v2	GAAGCTGTAATATACTCCGTATTTGCTAAGGTGTCTAATGATTTGGGCTTGGACAAAAAA	1180	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.375	1.298	1.043	0.922	0.430	0.512
Raw	1293.050	1862.642	1354.937	1841.807	307.791	398.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36692.2	1664	9e-22	1580 - 1634	100	55 / 55	plus	ABC18704
JLOC1	JLOC1_23663.2	1787	5e-22	1577 - 1631	100	55 / 55	plus
JLOC1	JLOC1_23663.1	1790	5e-22	1580 - 1634	100	55 / 55	plus
Harvest21	ABC18704	1246	3e-25	1181 - 1240	100	60 / 60	plus	ABC18704
Harvest35	U35_23421	1246	3e-25	1181 - 1240	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_23421 1246 Hv_44K_v2
GCTTAGAACCTCTTGTCAATGCAACAATACCTCTCTATTGTGCTTCAGTTTTGTATCGAC
TTGGTAAGTAACAGCATACGCATATATTTGGTGATCTAAACGCTCTTATATTTCTTTAAG
GAGGGAGTACTAATGTAGTTTCATTCAATACATTTCACATGGAGGTAAGAATGCTTCATA
TATTTTGAATATGGTTTGATGAGAAACAAAAGAACAAACCTGAATGGTTATGCCTTACAC
CAGAACTGTACCTAAATATGATCGATGCACTCAAAATTATCAGAAGTTCCTTTGAATCTT
TAGAGCATTAGCAGTGAAAGCAATTTTAGAACACAGGCAGCTACTCCAAATCTAGTGAAC
ATAGTAAGTTTACAGAGTAAATCATCACAGGTTCCAAGCAATAACAAAAGCGTGGTGTGT
TTGCATAGGCTCATGTACTCAACTTACTGCTAGTTATGTTATTTGATGCAGCAGGGAGAA
TTGTGAAGAATCAGAACAACTCGTGGAGAAAGGAAGAGATATTGATAATGAAAATGCCGT
AGATGAAAATGAACTTTGCAAGCAACTACAGCTTATTTCGGAAGAACGCGACAGCTTACT
TTCTAAGACGAAACAAATGAACTTAGTGATCAATGAATTACAAGCCTTAGTGGAGGTTTA
TAATAATGAGTTACTACAGGCCAAAGCTAATATGGACGAGTTGAGCTGTCAGATATCTAC
CATGGAGGTCAAGATGCAAAATGATGCCTCCACCTACAACAAAGAGAGGACAAAGCTCCG
CATGCAAATCCGGTGGTTGCAACCAGAGCTCGACGCAAACCGTGGAAGGCTTAAAGAGGC
GGTAGAAGAAAGGGCGCTGATGGATGGGAAGTATCAGGAAGCAACGGCCATGCTGAAGAG
AAAACTTAGAGAGACGTGCCGTGAGGTCCTGAGGCTGAGAGACGAGCTTAAGAGGCCAGA
AGCCACACCAAACTGACGCAGTAACCTCTCTTCTTCGCAGCTAGAGTACTAACCTAGTGG
AACCGTTTCACATGTCGCCAGCAGCGAACATTGTCTCAATGCAGGTCTGACTCTTTCAGA
CTAGTGCTTGAGCCGGCTTCATTAATTAAGTTTGCCAGATTGTACAGGCCTGGACCGCTG
GTGCCTCGTGCAACCAATAACTTTGCCAGCGTTCCGCTCAGAAGCTGTAATATACTCCGT
ATTTGCTAAGGTGTCTAATGATTTGGGCTTGGACAAAAAAAAAAAA

Homology of Contig U35_23421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25380.1	499	2e-52	protein\|kinesin motor protein-related, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None