barSeed - Barley Seed Development Database

Probe CUST_23168_PI390587928

Source Contig U35_10743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23168_PI390587928	Hv_44K_v2	TTCTGAGAATCTCCACAGGAAGCTAGGAAAAGAATTGTCTGCGATGAAACCAGCATTTCT	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375151	2573	2e-24	996 - 1055	100	60 / 60	plus	None
MLOC	AK364972	2573	2e-24	1048 - 1107	100	60 / 60	plus	None
MLOC	MLOC_44328.3	3628	2e-24	1889 - 1948	100	60 / 60	plus	None
MLOC	MLOC_44328.2	2352	2e-24	543 - 602	100	60 / 60	plus	None
MLOC	MLOC_44328.1	2281	2e-24	562 - 621	100	60 / 60	plus	None
JLOC1	JLOC1_28720.1	2370	8e-25	561 - 620	100	60 / 60	plus
Harvest21	ABC21636	635	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_10743	637	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_10743 637 Hv_44K_v2
GCCGGCCGCCGGATCCGCAGGCGCGCGCGGAGGGGGCCCGCCGCGTCCCCCCTCCACGGC
GGCGACGACGACGTGGATCGGCCACATATTTCAGGTGGCTGTGGTAGGGATCTTTCAGCA
CCATTGATGGAACATGAAAAGTTACATGAAGATCGATGCCATTCAAGGCAGTCTCTTCTC
CTGCAAGTTACACTAGCTCAATTGGGGCTGCTACCATAAACCTCGTCAGTCCTACTCGGT
CATTGAATTTCCGGGATAGATACAGGGATGCAGGTTGCAATCTTAAAACATCAACAGAGC
TATTGAAAGTTCTGAATCGTATTTGGAGCTTGGAAGAACAGCATGCTGTTGATGTGTCAA
CCGTTAAGGGACTGAAATTGGAGTTGCAGAATACACAGGCACGTGTTCAAGAGCTTACAC
AAGAAAGGCAGCGATATCACTATGAAATTGAGTCTCTGGCCAGGCAAGTCACTGAAGATA
AAATGGCTCGGAAAAATAAGGAACAAGAGAAGCTTAGAGCAACCCTTCGTTCACTGCAAG
ACGAACTTGAAGCTGAGAGACATCTGAGGAAACATTCTGAGAATCTCCACAGGAAGCTAG
GAAAAGAATTGTCTGCGATGAAACCAGCATTTCTCAA

Homology of Contig U35_10743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g31190.1	698	2e-70	protein\|intracellular protein transport protein USO1-related, putative, expressed
Brachypodium v1_2	Bradi1g39247.1	763	2e-84
Arabidopsis v10	None