barSeed - Barley Seed Development Database

Probe CUST_23167_PI390587928

Source Contig U35_10744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23167_PI390587928	Hv_44K_v2	TTGTGGGATTTGCATTTGTGATGGCTCGTGAGGAACTGAGGATTAATCACGTTGGGATCT	516	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.689	6.401	1.648	0.682	0.217	0.264
Raw	294.212	665.671	141.684	96.737	10.303	13.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68949.1	1797	2e-24	204 - 263	100	60 / 60	minus	None
MLOC	MLOC_68949.2	1850	2e-24	204 - 263	100	60 / 60	minus	None
MLOC	AK374013	2791	3e-22	2713 - 2771	98	58 / 59	plus	None
JLOC1	JLOC1_45666.1	1828	8e-25	1583 - 1642	100	60 / 60	plus
Harvest21	ABC25001	575	1e-24	517 - 575	100	59 / 59	plus
Harvest35	U35_10744	576	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_10744 576 Hv_44K_v2
CAGCTGCTGGACGCCACGCCGCAGTCGTTCCAGGAGGGATGGGCGGCGGCAAAGAAGGAC
ATCAACACGCTCAAGTTCGAGCTGGAGAGCATGAAGGCCAAGTACCTGGAGCTGCAGCAC
GACATGGACGCGCTGCAGAAGCAGGTGACGCAGTCCCCGGGGGGAGGCGAGCCCGGCGGC
AAGGTCGGCGGCGGCGGCGGCAAGGCGCAGCAGGGGCCCTCGGCGTGGAGCAACGGGTGG
AAGAAGCTGGGGAGGCTGGCCAAGATGACGGGCGCCGAGGCGGCGGGGCCCGGCGGGCAC
GGGCACGCGGCGGCGCAGAGCGAGGCGGCCAGGAAGGCGCATAGGAGGTGGAGGAACTCC
ATCTCGTGATGGACCAATCGATCGAGCTTCCTTCCTTCATTCATGGTGAGCGGAGCAGAG
CAGAGCAGACGGACCAGGATTAGATGCAGTTCATGGAGTTTTGCTTGTGATTTCCATTTG
TGCAGCGTGCTACTCGATCTANGAGAAGGGTGCTTGTTGTGGGATTTGCATTTGTGATGG
CTCGTGAGGAACTGAGGATTAATCACGTTGGGATCT

Homology of Contig U35_10744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None