barSeed - Barley Seed Development Database

Probe CUST_23162_PI390587928

Source Contig U35_22720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23162_PI390587928	Hv_44K_v2	TAGTTCGATGCCAAGAGTTTACAGGATACGACCCTAAAGTCAATGCTTACATCCGTACCC	685	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.413	0.678	1.523	2.415	0.801	1.031
Raw	14.823	39.861	74.704	199.943	22.650	30.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81357.1	734	7e-23	52 - 111	98	59 / 60	minus	None
JLOC1	JLOC1_54123.1	665	4e-23	555 - 614	98	59 / 60	plus
Harvest21	ABC16204	877	1e-23	621 - 680	98	59 / 60	plus
Harvest35	U35_22720	752	3e-25	686 - 745	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_22720 752 Hv_44K_v2
GCAAGTANNACTCGTCTCAGGAAAAAAAAAAAGCTAGCCCAAGTAACATCAAACCGAGGT
CGAGCTCGAGCGAGCAGAGGAGCCATGGCGGCGGAGGGGGAGGAAAAGGAGAAGATGGTG
ATGTTGCGGAGCGAGGACGGCGTGGACTTCGTGTTATCAGAGGCAGAAGCAGAGGCAGAG
GCCCTGTTTGGCAGGAAAATCAGAATAATGATGAAGTACGAGTCGGAGAAGCACGTCATC
CCTTCCGACGACGGCGGCGAAATCAGGTACTGCCTCATCCGCCTCTCCGTCCGAGGCGAC
ACACTCTCCAAGGTGATGGACTACTCCAGGACGCACGCCTCCGGATCCCACGACTTGAGC
GACTGGGATGCAGATTTCATCGCTGGTTTCAACCACGAGGCCCTCTTCGATCTCATCCTG
GCTTCGGAATATCTTCAAATAAGAGGACTGATTGACCTAGCCTGCCAGACTGTTGCTAGT
AAGATAAAGGGAAAATCTCCACGCGAAATTTGTAATATCTTTAACATAAAAAGTGTCTTT
GCTCCAGAATTAGATGGAGACACGATAGCAAAGCGATTGCAAGATTCCACAACATGTTCG
AGCGACAAGGAGCTGCCATGCAGTGAAACCCCATGTTTAATGCAAGAGCTCGAATGGGAG
GAAAAGGCTTTGCAGGCTCTTGACATAGTTCGATGCCAAGAGTTTACAGGATACGACCCT
AAAGTCAATGCTTACATCCGTACCCGATTCGA

Homology of Contig U35_22720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None