barSeed - Barley Seed Development Database

Probe CUST_23161_PI390587928

Source Contig U35_22721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23161_PI390587928	Hv_44K_v2	ACCGCAGTTTCACACATTATAGTACATGTGCCCAAAGATTCCTGTTGGAACATCAAAAAA	814	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.608	1.952	1.025	0.738	0.432	0.385
Raw	25.884	48.868	22.690	21.642	3.002	3.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_22721	885	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_22721 885 Hv_44K_v2
GGATAACTTGACGATTAAAGTGCGTCTTCCCAGTGACCAAGTTGTCATTGGCTCGTTACA
CCGTTGTGATTTCAAGTATGATCTTGCTGTTGTGAACATCAGGCATACACGTAGTATTCA
TATTCAGGAAGCACATCTCAGTTCAAGCCATCCCGTGCAATTTGAGTCTAATAGTAAGGT
AGTAGCTGTGGAGCGTTGTTTCAGCAAAGGCATGTTTAAGTTTACAAATGGGATAGTGAT
TGGCCCTGCAAGTGATGAACCCCGTAAGCTTATGATCTCCACACATAAAATGAACACGGC
TCTGAGTGGATACCCCCTTGTTGATTTTGATGGGAACTTTGTTGGAGTGAACCTCCGACG
TGGCGAAATGACTTTTTTTGTGCCAATGAACAAGATTCTTGAATTCCTGGGGCTCTCTGC
GACAACTAGCGCTGCTGATGCTACTGATAAACCTGATCCAAACAGTCGGGCACTGCTCGA
CGAGGGCCGCGATATGTCCCCGCATGACCGATATCTGTTCGAGCTGGCAAAGCATGAATT
TGGAGAGGTCTATGAGGAAGAGGATTATTACAGGTCTTCTTACGATTGAACCAATTTGGA
GATGTCTATTATAGGGAAGAGGGTGCAGATAGCAGGATGTACGATTGAACCAATTCGTTG
CTTGTGTTGCTTTGTTGCTTGGGTTGCTCCACTCTAGGAAATATCAAGCCGCTACTAGCT
ACTAATGATGCGTCTTTTGGTACTGCTTGTAATGGTAAATTTGAACCCATGCTTTGGCGT
TTAATAGTTATTTTTATCGCTGATGAGATCTACCACCGCAGTTTCACACATTATAGTACA
TGTGCCCAAAGATTCCTGTTGGAACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None