barSeed - Barley Seed Development Database

Probe CUST_2314_PI390587928

Source Contig U35_23423

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2314_PI390587928	Hv_44K_v2	TACGTGTACGGCATCATGACGGGATCCATGGAGCACTACGTGAAGAAGCTCCGGCACTAC	711	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354087	2364	2e-24	1188 - 1247	100	60 / 60	plus	ABC22781
MLOC	MLOC_16230.2	1608	2e-24	1290 - 1349	100	60 / 60	plus	None
MLOC	MLOC_16230.3	1896	2e-24	1558 - 1617	100	60 / 60	plus	None
MLOC	MLOC_16230.1	2696	2e-24	1453 - 1512	100	60 / 60	plus	None
JLOC1	JLOC1_11166.1	3289	8e-25	1386 - 1445	100	60 / 60	plus
Harvest21	ABC29173	353	3e-25	147 - 206	100	60 / 60	plus
Harvest35	U35_23423	918	3e-25	712 - 771	100	60 / 60	plus

Contig Sequence (918 bp)

>U35_23423 918 Hv_44K_v2
TGCGTGCCGGTCGCCACGCACGCCGACCTTGAGCCCTACATTGACCGCATCGTCGACGGC
GACGCCACGCCCATCCTCACCGGCAAGCCCGTCACCTCCATCTCGCTAAGCTCCGGCACG
ACGCAGGGGAAGCGCAAGTACCTGCTGTTCAACGAGGAGCTTGTCAAGTCCACGATGCAG
ATATACCGGACCTCCTACGCTTTCAGGAACAGGGAGTTCCCCGTTGAGGACGGCAAGGCG
CTGCAGTTCATCTACAGCAGCCGGCAGTTCACGACCAAGGGCGGGCTGACGGCCACGACG
GCGACGACCAACGTGTACCGCAGCGAGGAGTTCAAGGCGACGATGCGCGTGGTGCAGTCG
CAGTGCTGCAGCCCCGACGAGGTAATCTTCGGCGCCGACTTCGCGCAGTCGCTCTACTGC
CACCTCCTCTGCGGCCTGCTCTCCGCCGGCCAGGTGCAGATGGTGTCGGCCACCTTCGCG
CACAGCGTCGTGGTCGCCTTCCAGACCTTCGAGCGGGTGTGGGAGGAGCTCTGCGCGGAC
ATCCGCCGCGGCGCCCTGTCGCCGACGCGCGTCACCTCACCGGCCGTCCGGCAGGCCGTG
TCGGCGCTCCTTGCCGGGCCGAACCCCGAGCTCGCCGACGCCGTGGCGCGCAAGTGCGCC
GGCCTGAGCAACTGGTACGGGGTGATCCCGGCGCTGTGGCCCAACGCCAAGTACGTGTAC
GGCATCATGACGGGATCCATGGAGCACTACGTGAAGAAGCTCCGGCACTACGCGGGGGGC
CTCCCGCTGGTCGCCGCCGAGTACGGCGCGTCCGAGGGGTGGATCGGCGCCAACGTGGAG
CCGGCGGTGCCGCCGGAGTCCGCCACCTTCACCGTGCTCCCCGACATCGGCTACTTCGAG
TTCATCCCCCTCAGGCCC

Homology of Contig U35_23423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12160.2	463	0.0	protein\|OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
Brachypodium v1_2	Bradi2g07227.1	592	1e-177
Arabidopsis v10	AT2G46370.4	586	2e-126	\| Symbols: JAR1 \| Auxin-responsive GH3 family protein \| chr2:19034233-19036369 FORWARD LENGTH=586