barSeed - Barley Seed Development Database

Probe CUST_23141_PI390587928

Source Contig U35_22731

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23141_PI390587928	Hv_44K_v2	AGCTGTATAAACTGGATTTGAGTTTCAACTCTCTGCATGGTTCGGCACTCACGACCGTAA	808	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62341.2	3711	2e-24	1946 - 2005	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.1	3845	2e-24	1852 - 1911	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.3	3593	2e-24	1833 - 1892	100	60 / 60	minus	ABC44303
MLOC	MLOC_62341.4	3737	2e-24	1822 - 1881	100	60 / 60	minus	ABC44303
JLOC1	JLOC1_40797.2	3681	8e-25	1737 - 1796	100	60 / 60	plus
JLOC1	JLOC1_40797.1	3928	8e-25	1984 - 2043	100	60 / 60	plus
Harvest21	ABC18172	870	3e-25	809 - 868	100	60 / 60	plus
Harvest35	U35_22731	870	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_22731 870 Hv_44K_v2
TCTCTTGGCCTATTGAGCAACCTCACCAAGCTTATGCTTTCTCAAAACTCCTTGTCTGGC
CCAATCCCTCCTGAGATTGGTAACTGTCGGTTGCTGGACTGGCTAGAGTTGGATCATAAC
ATGCTCGATGGTACTGTTCCTAAAGAGCTGGCTAATCTGAGGCACTTGCAGAAGCTCTTT
CTATTCGAGAATCGTCTGACTGGGGAGTTTCCTGAGGATATTTGGGGCATCCGGTACCTT
CAAAGTGTTCTTATTTACAGCAATGGTTTCACTGGGAAGCTACCTCTTAAGTTGGCTGAA
CTGAAGTTATTGGAGAACCTCACATTGTTCGATAATTTCTTCACCGGAGTCATACCCCCA
GGTTTGGGTGTTAATAGCTCTTTACAGCAAATTGATTTCACCAACAATAGTTTTACCGGT
GGAATACCTCCGTACATTTGTTCAAGGAAAAGACTCAGGGTGTTGGTTTTGGGCTTCAAT
CTTCTCAATGGTAGCATCCCAGCCAGTGTTACAGACTGCCCAGGTTTGGAACGAGTCATT
CTCCAAAACAATGATCTTACTGGGCCCATTCCACATTTCAGAAACTGTGCAGCGCTGGCC
TATGTGGATTTCAGTCATAATTCTTTAAGTGGGGATATTCCAGCAAGCTTGGGCAAATGC
ATAAATACTACAATGATAAACTGGTCAGCAAACAAACTTGTTGGTTCAATACCACCTGAA
ATTGGAAACTTGGTGAATTTGGGAGTTCTTAACCTCTCACAGAACAGTCTACAGGGTGCA
CTTCCAGTGCAGCTTTCTAGTTGCTCCAAGCTGTATAAACTGGATTTGAGTTTCAACTCT
CTGCATGGTTCGGCACTCACGACCGTAAGC

Homology of Contig U35_22731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34640.1	1113	2e-131	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi3g34470.1	1118	3e-133
Arabidopsis v10	AT1G73080.1	1123	2e-76	\| Symbols: PEPR1, ATPEPR1 \| PEP1 receptor 1 \| chr1:27484513-27488021 FORWARD LENGTH=1123