barSeed - Barley Seed Development Database

Probe CUST_2313_PI390587928

Source Contig U35_23424

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2313_PI390587928	Hv_44K_v2	TCACCAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCTAATAGAGGTTTACTCCTCT	920	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.397	1.254	1.525	1.014	0.349	0.310
Raw	141.501	196.760	211.096	225.324	26.999	25.979

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367055	2233	2e-24	1375 - 1434	100	60 / 60	plus	ABC26289
MLOC	MLOC_7233.1	1486	2e-24	620 - 679	100	60 / 60	plus	ABC26289
JLOC1	JLOC1_4771.1	1414	8e-25	491 - 550	100	60 / 60	plus
Harvest21	ABC20928	978	4e-24	921 - 978	100	58 / 58	plus
Harvest35	U35_23424	980	3e-25	921 - 980	100	60 / 60	plus

Contig Sequence (980 bp)

>U35_23424 980 Hv_44K_v2
CCAGATCGAGCTTGAGAGGACACGTGTAGAGTATGAAGAGAAGAAAAAACTTGCGCAAAG
TCAAGCTGAAATAAAGGCACAAGTAGCTCGATATGAGGATGAGCTACGAAGGAAGAGAGC
ACAGCATGAGCATGAGGCACAGAGGGCAAGAAACCAGGAGCTCGTGAATATGCAAGAACA
ATCTGCAATTAAGCTAGAGCAGCTAAGACGCCAGAGTGAAGAGGAAATCAATGAACTACG
GAGACGGACAGAGAAGGAAAAAGCACTTATAGACCAGGAGACTACCAGACAGCAAAAAAT
GGCAGAGGCGGAGGCCAAAGCACTTGAACTGACACTGTCTGAAGAAGTGAATCGGCGATT
GCTTATTGAGAAGGCAAATGCCGAGCGGGAGAAGTGGGTCCAAGCAATAAATACAACTTT
TGAGCATATAGGAGGTGGTCTCCGGACGATATTAACTGATCAGAATAAGCTAGTAGTAGC
AGTTGTAGGCACAACTGCACTTGCAGCTGGGATTTACACAACAAGGGAAGGTGCAAGAGT
AGTCTGGGGTTATGTTGACCGTATTCTGGGCCAGCCATCACTGATCAGAGAGTCATCGCG
AGGGAAGTACCCTTGGTCCGGTATCCCCTCACGTGCTATGAGTACTGTGACTAGCAAATT
GAAAAATGGGAGCAATCTGGGGAAGGATGGGAAAGGTTTTGGTGATGTTATTCTAAATCC
ATCTCTTCAGAAGAGAGTGAACCAACTAGCTAATGCCACCGCAAACACGAAGCTTCACCA
AGCCCCCTTTAGGAACATGCTTTTCTATGGGCCTCCTGGCACAGGGAAAACAATGGCAGC
AAGAGAACTAGCTCGTGAATCTGGACTAGATTATGCACTGATGACTGGTGGAGATGTTGC
ACCATTAGGATCACAGGCAGTCACCAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATC
TAATAGAGGTTTACTCCTCT

Homology of Contig U35_23424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46990.1	641	2e-162	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi3g52367.1	475	2e-178
Arabidopsis v10	AT5G16930.1	644	3e-149	AAA-type ATPase family protein \| chr5:5568578-5571565 FORWARD LENGTH=644