barSeed - Barley Seed Development Database

Probe CUST_23138_PI390587928

Source Contig U35_22734

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23138_PI390587928	Hv_44K_v2	AAATCAATCATACCACAAGATAGAGAGTTAGTTGTCCATGGATCGGGGCCTCCAATGGAG	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374937	1858	2e-24	43 - 102	100	60 / 60	plus	ABC11515
JLOC1	JLOC1_4494.1	2950	8e-25	32 - 91	100	60 / 60	plus
Harvest21	ABC17961	521	3e-25	19 - 78	100	60 / 60	plus
Harvest35	U35_22734	522	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_22734 522 Hv_44K_v2
ATCTCGAGCTACCCAAACAAATCAATCATACCACAAGATAGAGAGTTAGTTGTCCATGGA
TCGGGGCCTCCAATGGAGCAGGCCGGCGTCGCTGCTCCTCTTGGGGGCGGCGTTCCTGGC
GACGGCGGCCGTATCGAGCGCCAACCCGGCGTACAACCCCGACCCCTACAGCGTCGTCGA
CAACTTCAACCGCGCCGTCCACAGGTCGACTAGCCCGCGTCGTGCGCTGTCGTCGGAGAA
GAAAGAGAAGAAGCAAAAGTACAATGGCCCGTGCCTGGCGACGAACCCGATCGACCGGTG
CTGGCGCTGCCGCAAGGACTGGGCGACGGACCGGCAGCGGCTGGCCCGCTGCGCCAAGGG
CTTCGGCCGCGGGGCCACCGGCGGCCTCCACGGCAAGATCTACATCGTGACGGACCCAAG
CGACGAGGACTTCACCAACCCGCGTCCCGGCACGCTCCGGTGGGGCGTGGTCCAGCTGGA
GCCTCTGTGGATCATCTTCGCCAGGGACATGATCATCAACCC

Homology of Contig U35_22734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12300.1	447	8e-55	protein\|pectate lyase precursor, putative, expressed
Brachypodium v1_2	Bradi1g37280.1	449	8e-52
Arabidopsis v10	None