barSeed - Barley Seed Development Database

Probe CUST_23111_PI390587928

Source Contig U35_3916

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23111_PI390587928	Hv_44K_v2	AGTGACGACGGCAGATCGTTTCTACCTTTATTAGTTGTTCCTTCGCATATAGTTTTCTTT	1086	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.139	1.590	1.054	0.894	0.430	0.471
Raw	1046.000	781.186	484.968	641.996	109.157	129.541

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365613	1977	2e-24	1847 - 1906	100	60 / 60	plus	ABC09029
MLOC	MLOC_11860.1	766	2e-24	571 - 630	100	60 / 60	plus	ABC09029
JLOC1	JLOC1_7905.1	749	8e-25	571 - 630	100	60 / 60	plus
Harvest21	ABC09029	1256	3e-25	1087 - 1146	100	60 / 60	plus	ABC09029
Harvest35	U35_3916	1256	3e-25	1087 - 1146	100	60 / 60	plus

Contig Sequence (1256 bp)

>U35_3916 1256 Hv_44K_v2
GAAGCGGTTCATGAATGCAAATGGTGACATTGACGAAGAAGGGCAGGAATTCAAGCTTAT
TGTCAACAATGGGATCAAAATTGGTGCATCTCTCTCTGTTGCTGAATACATTTGGTACCT
GAGATGGCTGTGTCCACTTAATGAGGAGCTTTACAAGACCCACAATGAGAGAAGGGATCG
TCTGACCAAGAAGATCATTGAAGAGCATGCGCAGGCCCTCAAGGAGAGCGGTGCTAAACA
GCACTTTGTGGATGCACTGTTCACTCTCAGAGAGAAGTATGACCTTAGTGATGACACAGT
TTTCGGACTTCTATGGGACATGATCACCGCTGGGATGGACACGACAGTCATATCAGTCGA
ATGGGCCATGGCAGAGCTGGTCAGGAATCCCAGGGTGCAGCAGAAGCTGCAAGAGGAGCT
CGACAATGTCGTCGGCCGTGACCGCGTCATGGCCGAGACCGACTTCCAGAACCTGCCGTA
CCTGATGGCCGTCGTCAAGGAGTCCCTCCGTCTGCACCCGCCGACGCCGCTCATGCTGCC
CCACAAGGCCAGCGCGAGCGTCAAGGTCGGCGGCTACAACATCCCCAAGGGTGCCAACGT
CATGGTGAACGTGTGGGCGGTGGCCCGAGACCCCAAGGTGTGGAGCAGTCCGCTGGAGTT
CAGGCCGGAGCGCTTCCTGGAGGAGAGCATCGACATCAAGGGCAGTGACTTCAGGGTGCT
GCCCTTCGGCGCGGGCCGGAGGGTGTGCCCCGGCGCGCAGCTCGGGATCAACCTCGTCGC
CTCCATGATCGGGCACATGCTGCACCATTTCAAGTGGTCTCTGCCGGAAGGCACCAGGCC
GGAGGACATTAGCATGATGGAGTCCCCCGGGCTCGTCACCTTCATGGGCACGCCGCTGCA
GGCCATCGCCACGCCGCGCCTGGAGAAGGAGGAGCTGTACAAGAGGGTCCCGGTTGAGAT
CTGAGCGGCATGTGCTGCTTTCCTTGGAGTGTTGTTACACCGCTCGCTGCTTTCAGTTAG
GTCCTGGATGGAGCTCGTGTTGTTGTAAATCGTGAGTTGTTGAACTGCCTTTTTTGAATC
TCATAAAGTGACGACGGCAGATCGTTTCTACCTTTATTAGTTGTTCCTTCGCATATAGTT
TTCTTTTTTATGTTAACAGTTTAACACAACTGTTAAGCTTCATGTTGTTCCTTCGCATAT
AGTTTTGTTTTTCTGTTAAAGCTTCATGTTGTTCCTTCGCAAAAAAAAAAAAAAAA

Homology of Contig U35_3916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41440.2	363	0.0	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi2g21300.1	515	0.0
Arabidopsis v10	AT2G40890.1	508	2e-164	\| Symbols: CYP98A3 \| cytochrome P450, family 98, subfamily A, polypeptide 3 \| chr2:17058291-17060532 REVERSE LENGTH=508