barSeed - Barley Seed Development Database

Probe CUST_2310_PI390587928

Source Contig U35_23427

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2310_PI390587928	Hv_44K_v2	TGACATATCGTATTGCGCGCAAGAAATGGATGCAAATCAAATCCCACTGTACCTGGCAAA	617	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72321.1	1637	3e-22	65 - 124	98	59 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.2	1700	3e-22	65 - 124	98	59 / 60	minus	ABC26431 ABC34448
JLOC1	JLOC1_48094.4	1618	1e-22	1507 - 1566	98	59 / 60	plus
JLOC1	JLOC1_48094.3	1673	1e-22	1562 - 1621	98	59 / 60	plus
JLOC1	JLOC1_48094.2	2064	1e-22	1953 - 2012	98	59 / 60	plus
JLOC1	JLOC1_48094.1	1589	1e-22	1478 - 1537	98	59 / 60	plus
Harvest21	ABC34448	523	5e-23	444 - 499	100	56 / 56	plus	ABC34448
Harvest21	ABC26431	732	5e-23	45 - 104	98	59 / 60	minus	ABC26431
Harvest35	U35_23427	687	3e-25	618 - 677	100	60 / 60	plus
Harvest35	U35_48958	675	5e-23	45 - 104	98	59 / 60	minus
Harvest35	U35_38467	523	5e-23	444 - 499	100	56 / 56	plus

Contig Sequence (687 bp)

>U35_23427 687 Hv_44K_v2
GAGGGTTCCGCTAAGCTTGATTGAACGGTGGGGAAATGCTATGGATATTGTATACCCTGA
ATCAAAACGGTGCTGCTGTTTTACTAAAAGTTATTATCGCTATGTGAAGGGCACAGGCTC
TGTACTGGCTACATCTAAAAACGTCAGACCAGTTCCAAAAGAGAACCTTGAAATTTCTTC
ATTAAATGAGTTGGGTCTACGTTTTTTCACACCTCGAGAGGTCGCCAATTTGCATTCTTT
TCCCTCGAGTTTCCGTTTTCCGGATCACATAGGCCTCAGACAGCAGTATGCCATGCTGGG
TAATAGTCTTAGTGTAGCGGTTGTGGCTCCTTTGCTGCGCTATCTGTTTGCCGGGGCATA
GAGAAGTTCTCAATCATTTGGCAGTTTTACCGAGCTTGAAGACTTGCGATCAATCTGCCG
ATGGCCTAGCAGGAATTATAGTGAAGAGGTGGATGCGTGCAAAGTAAGGTGGTATGTATG
GACGAAGCTCAGCCTTTGGATCTACTCCGTATACAAATACCAGTCCAACGTTGTGCCTTT
CACCCACAACCATATTTTTGAGGTGCAGTTAGTAATGTGATATTTTTTTAGGGCAAGTGT
AATTTGATACTTTGTGATGACATATCGTATTGCGCGCAAGAAATGGATGCAAATCAAATC
CCACTGTACCTGGCAAAAAAAGAAAAA

Homology of Contig U35_23427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g43310.1	377	1e-69
Arabidopsis v10	AT5G25480.1	383	2e-52	\| Symbols: DNMT2, AtDNMT2 \| DNA methyltransferase-2 \| chr5:8870069-8872199 REVERSE LENGTH=383