barSeed - Barley Seed Development Database

Probe CUST_23109_PI390587928

Source Contig U35_3917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23109_PI390587928	Hv_44K_v2	AGTTTTCTCCTTCAGAGAATTCTCCTTCAGAGAATAAGCGTCCTGCCACAACGACTATCC	631	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365690	3470	2e-24	553 - 612	100	60 / 60	plus	ABC11445
MLOC	MLOC_38439.1	1442	2e-24	656 - 715	100	60 / 60	plus	None
JLOC1	JLOC1_24990.1	1027	8e-25	635 - 694	100	60 / 60	plus
Harvest21	ABC25918	692	3e-25	579 - 638	100	60 / 60	plus
Harvest35	U35_3917	745	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_3917 745 Hv_44K_v2
ATCTGCCTCTTAGCGGTCTGGTAGAGTTGCTCTTGCAAATCCCAAATTAATCCCAACACC
TTCCCGGCTTGGCCTTGCTTCGCTTCCGCATGCCTCCTCCTCGTCGCCAGCCTCCCAAAC
CCTAGCCCGCGCCGCCCTTTCCCAGAAACCCTAGATCTCCCTATGTCCTCCGCCGCTGCT
GCAGCCCCAGTCGTGGGTCAGGTCGTGGAGCGGTTCCGCGCGCGGCTGCGCGAGGAGGCG
GGAGAGGAGCCGAAGGCGGCCGCGGTGGTGGGCGTCTACAAGGAGGCCCTCGCCGAGCTC
ACCTTCAACTGCAAGCCCATCATCACCGAGCTCACCATCATCGCGGGCCAGCACGCAGCG
CTCGCTGCTAGGGGCATCGCCGACGCCATCTGCGCCCGCATCCTCGAGGTGCCAGTCGAG
CAGAAATTGCCATCTTTGTATCTGCTAGACAGTATTGTGAAGAACATTGGACGAGAATAT
GTAGCGGACTTTGCCACTCGATTGCAGAAGGTATTTTGTTTTGCATACAGGGAAGTTCAT
CCCAAACAGCATCCTGCAATGCGACACCTCTTCCGTACCTGGTCGCAAGTGTTCCCTTCT
TCTGTCCTTCAAGGGATCGAGAACGAGCTTCAGTTTTCTCCTTCAGAGAATTCTCCTTCA
GAGAATAAGCGTCCTGCCACAACGACTATCCCACGACAGTCAGAGTCGTTATCTCCTAGG
CCACCTCATGGCATCCATGTAAATC

Homology of Contig U35_3917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08830.1	972	3e-69	protein\|expressed protein
Brachypodium v1_2	Bradi3g15320.1	937	3e-81
Arabidopsis v10	None