barSeed - Barley Seed Development Database

Probe CUST_23107_PI390587928

Source Contig U35_3918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23107_PI390587928	Hv_44K_v2	TAGAAGTAGCTGTAACTGTAGCAGGAGCAGTGAGTAGAATTAGCACTTAGCAGCTGGTAG	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356349	1361	3e-21	1168 - 1227	97	58 / 60	plus	ABC09455
MLOC	MLOC_69624.1	1302	3e-21	940 - 999	97	58 / 60	minus	ABC09455
JLOC1	JLOC1_46151.1	1544	2e-21	1181 - 1240	97	58 / 60	minus
Harvest21	ABC27007	515	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_3918	671	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_3918 671 Hv_44K_v2
CCGAGTGCCGCCGCCGGAAACGCCTCAACGACTGCCTCTCCATGCTCCGCTCCGTCGTGC
CCAAGATCAGCAAGATGGACATGACGTCATTCCTGGGGGACACCATCGACTACATGAAGG
AGCTGCTGGAGAGGATCCGGCGGCTGTAGGAGGAGATGGACGGACCGGAGGTGGTGGCGG
CGCCGCCGCTGCTCAACGTGTTCCGGGAGCTCAACCCCAACGAGATGCTCGTCAGGAACG
CCCCCAAGTTCGAGGTGGAGCGCAAGGAGGGGGAGGAGGGCGACACCTGAGTAGAGATCT
ACTGTGCGGCCAAGCCGGGGCTGCTGCTGTCGACGGTGAGCACCCTGGACACGCTCGGCC
TCGACATCCAGCAGTGCGTCGTCAGCTGCTTCAACGACTTCGCCATGCACGCATCCTGCT
CCGAGGTGCAGATGCAGAGGGAGATGATAAGCGCGGACGCCATCAAGCAGGAGCTGTTCA
AGAACGCCGGCTACGGAGGCGGCTGCTTGTAGAGAGACGAGCAAGAAGCAGCACCATGAC
CACCACCACCATGAGTCCATGACCAGCAGGAAAAGCAGGAAGGATAATAAAGTAGAAGTA
GCTGTAACTGTAGCAGGAGCAGTGAGTAGAATTAGCACTTAGCAGCTGGTAGCAGCAGTG
GCGAAAAAGGC

Homology of Contig U35_3918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g30000.1	331	2e-63
Arabidopsis v10	None