barSeed - Barley Seed Development Database

Probe CUST_23103_PI390587928

Source Contig U35_41069

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23103_PI390587928	Hv_44K_v2	GCAAATGCTCATCATTTCATTAGTAGCCTGCCACATGGCTATGACACTCATGTGGGAATG	301	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.150	1.319	1.833	1.376	0.391	0.311
Raw	195.569	366.670	419.921	502.386	50.096	43.422

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5907.1	3308	2e-24	2520 - 2579	100	60 / 60	plus	None
JLOC1	JLOC1_3830.1	3331	8e-25	2516 - 2575	100	60 / 60	plus
Harvest35	U35_41069	376	3e-25	302 - 361	100	60 / 60	plus

Contig Sequence (376 bp)

>U35_41069 376 Hv_44K_v2
GATCTTTGTGCTGAGCAATTTTAATCTTAAGGTGAGCGGTGGGCAAACAGTTGCAGTGGT
AGGTGTTTCAGGATCCGGGAAGAGCACTATCATTTCCTTAATTGAGAGATTTTATGACCC
AATGTCTGGCCAAGTTCTGCTGGATGGCCGGGATCTGAAATCGTTCAACCTGAGATGGTT
ACGAAGCCACATGGGCCTAATTCAGCAAGAGCCCGTCATTTTCTCGACAACAATAAGGGA
GAACATTATCTATGCAAGACACAATGCAACAGAGGCTGAGATGAAGGAAGCTGCAAGGAT
AGCAAATGCTCATCATTTCATTAGTAGCCTGCCACATGGCTATGACACTCATGTGGGAAT
GCGAGGGGTTGATCTG

Homology of Contig U35_41069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17180.1	1412	9e-58	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g66290.1	1379	7e-58
Arabidopsis v10	AT2G39480.1	1407	2e-55	\| Symbols: PGP6 \| P-glycoprotein 6 \| chr2:16478249-16484827 REVERSE LENGTH=1407