barSeed - Barley Seed Development Database

Probe CUST_23097_PI390587928

Source Contig U35_3923

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23097_PI390587928	Hv_44K_v2	AGGAGACGATTGAGCTGCAGCTAAAGCTGCATGTCGATGTACCCAAGTTGTGTGTTTTTT	1241	GeneList: grey60 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.905	4.902	1.540	0.525	0.204	0.351
Raw	193.175	254.244	73.431	41.933	2.938	9.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64368.1	1339	2e-24	1222 - 1281	100	60 / 60	plus	ABC02966 ABC02967
JLOC1	JLOC1_42263.1	1336	8e-25	1219 - 1278	100	60 / 60	plus
Harvest21	ABC02966	500	3e-25	74 - 133	100	60 / 60	minus	ABC02966
Harvest35	U35_3923	1356	3e-25	1242 - 1301	100	60 / 60	plus

Contig Sequence (1356 bp)

>U35_3923 1356 Hv_44K_v2
TCGAGCACTGTTGGCCTGGAACTCACCCAACGAACATTCGAGCTAAGCTTATCTAGCTCG
TAGCCTCTAAATTTTCGAGCTCCTACTCCTTGGTGCTAGCAAGCTAGCAGCAGCAGCAGC
AATGGCGAACGCTTGCACCTTAGCGCTGCTTGGCGCGCTGCTGGTGCTCTCGCTTCTTGT
GAGCCCCATTGCTTGCTCCCGCAAGCTCGCCAAAGCCGTCGGGCAGCACAAGCCTGCTGC
AGTCAAGGGCCACAAAAACCAGACCGCCACTAACCCCTCTTCGTCTGCCGCATACGGCAG
CGGCTGGCTGCCCGCCGGCGCCACGTACTACGGCAACCCCAACGGCGACGGCGGCGAGGG
CGGAGCGTGTGGCTACCAGACCGCTGTCGGGCACCGGCCGTTCTCGTCGATGATCGCCGC
CGGGAGCTCCCCTCTGTTCATGAAGGGCAAGGGCTGCGGCGCGTGCTATGATGTTAAATG
CTCGAGCAACTCGGCCTGCTCCGGGAAGCCTGTGACCGTGGTCATCACCGACTTGAGCCC
CGGCAACCTGTACCCCGGCGAGCCGTGCCATTTTGACATGAGCGGCACCGCCTTGGGCGC
CATGGCGAAGCCTGGCATGGCCGACAAGCTCCGCGCCGGCGGCGTCATCAGAATGCAGTA
CAAGAGAGTGCCATGCAAGTACCCTGGCGTCAACATTGCCTTCAGGGTGGACCAGGGCTC
CAACCCCTTCTACTTCAAGACCCTGATCGAGTTCGAGGACGACGACGGCGACCTCAAGGC
CGTGGCCCTCAAGGAGGCCGGCAGCGGCGCCTGGACGCAAATGACACAGGACTGGGGCGC
GTTGTGGCGCCTCAACAACGGCAACCGGCTGCGCGCCCCCTTCTCGCTCCGGCTCACCTC
CGACTCCGGCAGGAAGCTCGTCGTCAACAACGTCATCCCCGCCAACTGGAAGGCCGGAGC
CACGTACCGCTCCCTGGTGAACTACCCCTGACCCTGAGTCACACCCATATTTATCTGCTC
AAGATGGCTCCTGCGTGTGAATTTTTATACCGCGAAAAGAAAGAATGTGCGTCCGGGTGC
TGCGAGAGGCGGTGTCAGATGAGGAGGAGGAGCTTGCAAAACTGTAATGTTCCCTCCCTG
GTCTCTGCATTCCCCTAGTGATGTATCATGTGTATGTAGTCCGTCCGCCCGTCCGTCTGT
AATTTTACTTCTTTTTTTTGCCTTCCTCTGCTTTGTTGTCGAGGAGACGATTGAGCTGCA
GCTAAAGCTGCATGTCGATGTACCCAAGTTGTGTGTTTTTTTACCACGCAATCCTTGAGA
TAAATGAATTTTCACGATCAAAAGAAAAAAAAAAAA

Homology of Contig U35_3923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44108.1	293	2e-115	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g50740.1	289	2e-143
Arabidopsis v10	AT2G45110.1	259	5e-70	\| Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 \| expansin B4 \| chr2:18599575-18601237 FORWARD LENGTH=259