barSeed - Barley Seed Development Database

Probe CUST_2308_PI390587928

Source Contig U35_23429

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2308_PI390587928	Hv_44K_v2	TTATTGCTGGGTTAGTTAATGCATCAACTTACTGAATAATTCAATGCGTAGTTCATGCTC	542	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.488	1.811	1.362	0.641	0.227	0.281
Raw	2210.507	4076.740	2752.503	2052.180	245.741	339.586

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65740.1	2604	7e-23	349 - 408	98	59 / 60	minus	ABC19923
MLOC	MLOC_65740.2	986	7e-23	13 - 72	98	59 / 60	minus	ABC19923
JLOC1	JLOC1_43278.1	1717	4e-23	1463 - 1522	98	59 / 60	plus
Harvest21	ABC19923	620	3e-25	543 - 602	100	60 / 60	plus	ABC19923
Harvest35	U35_23429	620	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_23429 620 Hv_44K_v2
GGAGGAGGAGACGGGTGCTGACGCCGTGGGAGAGCTGAAAGAAGAGTACAATACCGAGGA
GGAGCTGGAAGAAGGGTACTACACGGAGGAGGAAGACTGGGAAGACGACGATGATGATAG
CGAGTGCTTTGATGATCTGTGCGAAGGGATGTGCAAGATGTCGGTGCTCGAGGCGGAGGA
GAAGAAGAAGGTTGGGCTGCCGGCGTTCGAGGGCAGGCACACCCGGTTCGTCTACAACAG
CGACGACGAGATCGTGGAGACGAAGGAGGTGGAGAACGCGGCGGCGGAGCACGGCGCGCT
GCTGAGGGGGCTGCCGGTACCGGAGGGGAAGCATCTCCGGTTCCACGATGACGACGACGA
GGAGGAGTAAGCAGCATGGATCGAAGGGGTGTTTACGTTGATGGGATACTGTAGTGTGGT
TGTCGCTCCCTGACACCAACCAAGCAACACATTCTTTTGGTTTGGACAGGCTATCTTTTT
TTTTTGGCTTTGCTTACTTTATTATGTTCCAGTTCTTCTGAGGACATGGTGGTAAATCTA
GGTTATTGCTGGGTTAGTTAATGCATCAACTTACTGAATAATTCAATGCGTAGTTCATGC
TCNAAAAAAAAAAAAAAAAA

Homology of Contig U35_23429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None