barSeed - Barley Seed Development Database

Probe CUST_23078_PI390587928

Source Contig U35_3934

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23078_PI390587928	Hv_44K_v2	ATTTGTATATTTTGAAATTGCGATGCTACGTACTGCCTGCCTGCCCTTGTACACAAAAAA	999	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.144	0.384	0.858	1.224	2.101	2.694
Raw	428.973	1705.591	3527.677	7371.170	4480.563	6398.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8336.1	1769	5e-22	1419 - 1473	100	55 / 55	plus
Harvest21	ABC08416	1070	3e-25	1000 - 1059	100	60 / 60	plus	ABC08416
Harvest21	ABC48993	599	2e-22	331 - 385	100	55 / 55	plus	ABC48993
Harvest35	U35_3934	1070	3e-25	1000 - 1059	100	60 / 60	plus
Harvest35	U35_47699	599	2e-22	331 - 385	100	55 / 55	plus

Contig Sequence (1070 bp)

>U35_3934 1070 Hv_44K_v2
GGCCGCTGTTGCGTGACACGCTCGCCTGCCGTTCCCAGTTTCCCACACGCCCTCACTCGC
TAGCTAGCTACTCCCATTATTCTCACCTGTCCCCGTTTGATCCATCTTCCGATCGCCTTC
TCCATCTCTGCGAGCATCCATCCCAGGCCGGATCGGAGCCATGGCGGCCAAGAAGATCGT
GGTGAAGCTGGAGCTCCATGACAACAAGGACAAGCAGAAGGCCATGAAGGCCGTCTCCGT
GCTCGTCGGCATCGACGCCATCTCCATGGACATGGCGTCGCGCAAGATGACGGTGCTCGG
CACGGTGGACCCGGTGGACGTGGTGAGCAAGCTGCGCAAGGGCTGGGCGGCCTACATCGA
GTCCGTCGGCCCGGCCAAGGAGCCCGAGAAGAAGGAGGACAAGAAGGAGGAGGCCAAGAA
GGACGGGGACGGGGCCAAGAAGGAAGGCGACGGCGGCGACGCTAAGAAGGACGGCGACGG
GAAGAAGGACGGCGACAAGAAGGAGGAGGGCGACGGCGGGAAGAAGGACGGCGACAAGAA
GGAGGATGGCGACGGCAAGAAGGACGACGCGGCGGCCAAGAAGGACGGCGACAAGAAGCC
CGCCGCCGTGGCCCCGCTGCCGTTCCCGCACCACATGCCGCTGCCGCACCACATGCCGCC
GCCCTACATGTACAACGCCGACTACATGATGAACCAGCAGTACCGGCCGGCGCCGCCGGC
GTACCCGCCGCCGTACGTGCCGCCGCAGCACTACTACGTGCGGAACATGAGCATGGAGGA
GAACCCAAACTCGTGCGCCATCTGCTAAATCCGAGTCGCGCGTGCGTGCGTGCGTCTTGA
CCCTTGCTCGCCAACGTTCCGCGGGGTGACCGTGCATGCCTCTGCCTCTGTGTATAGTAT
TTCCTCGATCGTTTTTACGAGACCAACAAAGTTTGCAAGATGAAACTGTACAACTAGCTA
GTAGTCTACTGCTCTCTACTATAGCACTTATGTACGTACATTTGTATATTTTGAAATTGC
GATGCTACGTACTGCCTGCCTGCCCTTGTACACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None