barSeed - Barley Seed Development Database

Probe CUST_23076_PI390587928

Source Contig U35_41084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23076_PI390587928	Hv_44K_v2	TTTCTGAACAAAAATCTCCTGACAATGCTTCTGTGTGCTGGGAGGACAGTGATCCAAGAG	228	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53405.2	9149	2e-24	7035 - 7094	100	60 / 60	plus	None
MLOC	MLOC_53405.1	9373	2e-24	7006 - 7065	100	60 / 60	plus	None
JLOC1	JLOC1_34312.2	8132	8e-25	5933 - 5992	100	60 / 60	plus
JLOC1	JLOC1_34312.1	9326	8e-25	6927 - 6986	100	60 / 60	plus
Harvest35	U35_41084	327	3e-25	229 - 288	100	60 / 60	plus

Contig Sequence (327 bp)

>U35_41084 327 Hv_44K_v2
CACCACTTCCATCTGAACAAACATCAAATATTCTTATGGAGCGGCTTAACACTAAGCTGC
TGGGCACAGAAGCTCCGGAATTTGACCTTAGCTGTGACAAAGATGGTAGCGATTATTTAG
AGACTGAACCTGCTGTGAACAATGTTTGTAGAAATATTCTTATGGACTACAGTTTACCAA
AGGATTGTTCTACGGATGATTACCAGCAAATGGGGCTCTTTGAAGACCTTTCTGAACAAA
AATCTCCTGACAATGCTTCTGTGTGCTGGGAGGACAGTGATCCAAGAGGAGTGTCAGCTA
CCATTGAGAAGCCTTCACCTTCATTTG

Homology of Contig U35_41084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None