barSeed - Barley Seed Development Database

Probe CUST_23075_PI390587928

Source Contig U35_3936

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23075_PI390587928	Hv_44K_v2	TTGCCGTTTGTTTTCTCCGGATCAAAATTAGAGAAGAAAAGTAACACAGCTGTAACTGTT	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64860.1	1395	2e-24	1248 - 1307	100	60 / 60	plus	ABC09311 ABC11073
JLOC1	JLOC1_42627.1	965	8e-25	771 - 830	100	60 / 60	plus
Harvest35	U35_3936	710	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_3936 710 Hv_44K_v2
CAGAACCGCGGATTCCCAAAACCAGCAGCGCGGAAGGCGGAACACAGGAAGCAAAACCCC
CTTCCCCTCCGGCTCGATTCGATCCTTCTCCGTCCCCCGATCATGGCGTCCTCCTCCTCC
TCCTCGCAACTCGACGATCCGTCGGCGAGGCGCCCGCCGCCGCCGCAGAGGAAGCCGCCG
GTGCTGATGCTGCTCCCGCTCATCTACGCCCCCGTTCTGCCCCTCATCAGGATCGGGCTG
CGGCATAACCCGGTGTGGAGGGACCGCCTCTTCTACGGCGTCCTCGCCGGCGCATTCGTA
CATGGCACCTACCTCATATCAGAACTGTACGACGTGGAGAGCAAGTGAATCATGCCCTAC
AAAGCTCCAGCTATGAGTTTGCGACAGCAATTTATGACGATTGCAAGTCTACAATTGATG
AGGGGGTGACTGGTTTTTCATATTAGCATGTTTGCCCTCTACCTGTTTCTCTTAATTCGA
TTCAAGGTTTATGTTTGCTATACTGATAGAATGCTTGAGCGCACAAAATAATATTGGCTG
CCAGAGCAATGCACCTGGCAACACTTGCAAATTCTCTATTCGTCGCAGTTATCTATTCCT
CCTTAAGCTGTCGGTCTGTTTGTTCTCATGTGTTGCCGTTTGTTTTCTCCGGATCAAAAT
TAGAGAAGAAAAGTAACACAGCTGTAACTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None