barSeed - Barley Seed Development Database

Probe CUST_23073_PI390587928

Source Contig U35_3937

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23073_PI390587928	Hv_44K_v2	TGCCACAGCATTTGTGGCGTTCTGCAACATTGTTATTGAATAGCCTCTTTATTATATGTT	1296	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.418	1.522	1.788	0.943	0.278	0.262
Raw	9256.523	15125.043	15729.333	13173.633	1338.685	1389.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29298.1	1552	8e-25	1378 - 1437	100	60 / 60	plus
Harvest21	ABC11881	1350	6e-22	1281 - 1334	100	54 / 54	plus	ABC11881
Harvest35	U35_3937	1397	3e-25	1297 - 1356	100	60 / 60	plus

Contig Sequence (1397 bp)

>U35_3937 1397 Hv_44K_v2
TTCGAAAACTTTCCTCGCGAAACCCCAGCCCCCGCTCCTCCGCCCCCCACCTCCTCCTGG
TCGTCCCTCGCGGTTCCGGTCTCCGGCGGCGGAGAAGCAAGGGAGGACGCCGGAGATGTC
GGTCAGCAACATAGGGATGATGGACGGCGCCTACTTCGTGGGGCGGAACGAGATCCTCGC
CTGGATCAACACCACGCTGCAGCTCAGCCTCGCCAAGGTCGAGGAGGCGGCGTCGGGCGC
GGTGGCGTGCCAGCTCATGGACGCGGCGCACCCCGGGGCGGTGCCCATGCACAAGGTAAA
CTTCGACGCCAAGAACGAGTACGATATGATCCAGAACTACAAGGTCCTGCAGGATGTGTT
CAACAAGCTGAAGATCACCAAGCACATTGAGGTCAATAAGCTCATCAAAGGAAGGCCCCT
GGACAACTTGGAGTTCATGCAGTGGATGAAAAGATACTGCGATTCTGCCAATGGCGGATT
CATGACCAGCTACAATGCTTCTGAGAGAAGGGAAAGCAGCAAGGGTGGGAAAGACACAAA
CAGAAGGGCATCAGGGACTTCTCAGGCGCCTGCCAAGTCTGCATCCGCCACCCACAAAGC
TCAGCCCCCGTCACATGCTGCTAAGCGGGCCAACGTGCATGCTTCAAATGCTCCACAGCG
GTGCCCAAAGCCACCTCCAGCTGCAGCACCAGCTTATGATGCACAGATGACTGAGCTGAA
GCTCCTTGTTGATAGCGCTGAGAAAGAGAGGGATTTCTATTTCTCCAAGCTGCGGGACGT
CGAAATCTTGTGCCAGAGCCCTGAGGTTGAGCACTTACCGATTGTGAAGGCCATCCAGAA
GATACTGTATGCTTCGGAGGATGATCCCTCGACGTTGGCGGAGGCCCAAGCGGAGATGGT
GGCGCAGCAGAATCAGATCCAGCAGCAGCCAATGCTGAGCCCGATCCTGGAGGCGTCCGA
GGCCCCAAGCATCACCCCCAAGGAGTCTTCAGAGGAGAGCTTGAGGCAGGAAGCTGCTGC
GGCGCACAAGAGGAAGAGCATATCGGACCTGGAGGAGTTCGAGATGGGGTCGAGCTCCAG
GATGAGGCTCTCTGACGTCTCGGACGTGCAGCTGTGCGGCTCACCGTTGATGAGCTTCAC
CTGAAAGGAGGGACCCCGAATTGCAGGGTTATTGTCATGGCCGGTTATGACTTGTGGCCG
GTTTATCTTGTGTTCTTTCGTTTGTTGTTCGGTGTTATAACGGGTGTGCTCTTGTGGAGC
TGGAGTTGAACTTCTTGCCTTTGAATGTGATCGATCTGCCACAGCATTTGTGGCGTTCTG
CAACATTGTTATTGAATAGCCTCTTTATTATATGTTAATTGGTGTTTTTGTGGCCGGTTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_3937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35580.1	333	2e-173	protein\|ATEB1A-like microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi3g30010.1	342	0.0
Arabidopsis v10	AT5G67270.1	329	2e-110	\| Symbols: ATEB1C, EB1C, ATEB1H1 \| end binding protein 1C \| chr5:26840248-26841984 REVERSE LENGTH=329