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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2306_PI390587928Hv_44K_v2CATCTTAGGTCATGTTCGGATTGTCTTTTCCCCAACAGATACATTTGTATAGGAAATACA490GeneList: orange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0060.8401.1261.5350.5650.781
Raw 13.71217.62721.28648.1294.9028.570



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_55469.128947e-232430 - 24899859 / 60plus None
Harvest35U35_354035533e-25491 - 55010060 / 60plus



Contig Sequence (553 bp)

>U35_35403 553 Hv_44K_v2
GGCGAATTGGGCCCATTACATAATGCTCGAGCGGCCGCTCATGTATCGCAGCTGCTGGGC
AAACATGGACACATGGTTGAGCTCGAGGATTTTGTGGATCACATGCCCTTTGAGCCAACA
ACCACAATATGGCTAAGGATCTTCGACTGCTGCAGGGAATATGGAAACAGGAAATTAGGG
GAGCGGGCTGCCAAGTGCATCAATGATAGCAATCCCCAGATACCGGTTCGATATGAGGCT
ACCGCAGACTACGAGTGCAGCGATCATGGCAGTGCGGGGCCCATGTCATGTGGTAGCCCG
GAGGAAGAATTGATGTTGCCGCTGTGAGTGCCATGACATCGACTCACTGGTGGCTGAGCA
GAAATTCTTAATTGCCAAATCAAGGAACAGGCTCGAAAATGATTTTCAGCTGCTTGTGAA
CTTACAGCACCAGTGTTGACAGGAGCTCGTGTTTTCTGTAATTAAGGATAATAACAAGAC
ATCAAGCTTTCATCTTAGGTCATGTTCGGATTGTCTTTTCCCCAACAGATACATTTGTAT
AGGAAATACAGAC



Homology of Contig U35_35403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None