barSeed - Barley Seed Development Database

Probe CUST_23053_PI390587928

Source Contig U35_3950

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23053_PI390587928	Hv_44K_v2	CATGCTGTTATTTCCACAGTTGCGCTTTAAGATCATATAATGATCTCTAGTTATGGCGAT	941	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.017	0.049	0.708	3.040	1.623	1.350
Raw	7.638	38.837	497.211	3349.344	601.861	552.125

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2259.1	3573	2e-24	1413 - 1472	100	60 / 60	minus	ABC09788
JLOC1	JLOC1_1356.1	2581	8e-25	1063 - 1122	100	60 / 60	plus
JLOC1	JLOC1_1354.2	1935	8e-25	1646 - 1705	100	60 / 60	minus
JLOC1	JLOC1_1354.1	1700	8e-25	1411 - 1470	100	60 / 60	minus
Harvest21	ABC09788	1101	3e-25	941 - 1000	100	60 / 60	plus	ABC09788
Harvest35	U35_3950	1169	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1169 bp)

>U35_3950 1169 Hv_44K_v2
ACACACACACACAAGGCGCACGGTTGCAAAACAAGGGAGTTATTTTTAGAAGCAGGGAGT
AAGGAACCACCTGAAGCCATGTGTATCGCTGCATGGATTTGGCAGGCTCACCCACAGCAT
CAGCTCCTGCTGCTGCTCAACAGAGATGAGTTCCATAGCAGGCCTACAAAGGCAGTAGGA
TGGTGGGGCGAGGGCTCAATGAAGATTCTTGGTGGCAGGGATGTACTCGGTGGAGGAACA
TGGATGGGGAGCACCAAAGATGGCAGGCTTGCCTTCCTGACCAATGTGCTCGAGCCTGAT
GCAATGCCCGGCGCACGCACTAGGGGAGACCTGCCCCTCAGGTTCCTGCAGGGAAACAAG
AGCCCACTGGAGGTTGCGACTGAAGTGGCAAAAGAAGCTGATGAGTACAATGGCTTCAAC
CTTATACTAGCTGATCTAACCAGGAATGTCATGGTCTACGTGTCAAACCGGCCAAAGGGG
CAGCCTGCGACAATTCAGCTCGTCTCACCAGGACTCCATGTGTTGTCCAATGCAAGGCTT
GATAGCCCTTGGCAGAAGGCAATTCGCCTTGGTAAAAACTTCAGGGAGTTTATAAGGAAG
CATGGTGATGATGAAGTTGAAGCGAAGGATATAGCTGACAGACTAATGACTGACACGACG
AGGGCTGATAAAGATAGGCTGCCAAACACCGGTTGTGATCCCACCTGGGAGCACGGTCTG
AGCTCCATCTTCATCGAGGTGCAAACTGACGAAGGGCTCTATGGGACAAGGAGCACAGCA
GTTCTTTCAGTGAACTATGATGGAGAAGCTAGCTTATATGAAAAGTACCTCGAGAGTGGT
ATATGGAAGAACCACACAGTGCATTACCAGATAGAGTAGCCAATGCGGACCTAAAGGCGG
GAGCCCAAAATAGGAAGAAAGAATGAATAGCTACAATTGTGCATGCTGTTATTTCCACAG
TTGCGCTTTAAGATCATATAATGATCTCTAGTTATGGCGATTAAATTATTTACTGTATGC
AGATTTATCAATTCAGAGAGAGATCATTCAAATTGTTGAATATATATACATAATAATAAT
AATATGATATGATATGTATATTTACAGACTTCATGTTGCCACCTTTGTCTATGAACATAC
ATGCTTTACTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g15480.1	267	0.0	protein\|Ser/Thr-rich protein T10 in DGCR region, putative, expressed
Brachypodium v1_2	Bradi1g29750.1	267	0.0
Arabidopsis v10	AT4G38260.1	275	1e-80	Protein of unknown function (DUF833) \| chr4:17937077-17938210 REVERSE LENGTH=275