barSeed - Barley Seed Development Database

Probe CUST_23052_PI390587928

Source Contig U35_3951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23052_PI390587928	Hv_44K_v2	GCAGATTCGTTTTTATGTCTCATGTTCCACACCTCAATCAATCACTTATGTTGCAAAAAA	1332	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.446	1.336	1.041	0.806	0.282	0.338
Raw	436.364	601.647	436.069	538.871	65.085	85.097

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23279.1	689	3e-21	117 - 170	100	54 / 54	minus	ABC09080 ABC09081 ABC09082
Harvest21	ABC09081	538	3e-25	468 - 527	100	60 / 60	plus	ABC09081
Harvest35	U35_3951	1403	3e-25	1333 - 1392	100	60 / 60	plus

Contig Sequence (1403 bp)

>U35_3951 1403 Hv_44K_v2
GCGCTCTCGAGGATGTCAAGAAGACACTGGATGAACTTGTTACTCTTCCAATGAGGAGAC
CAGAGCTTTTCTCGCGTGGGAACTTGCTAAGGCCTTGCAAAGGAATATTGCTTTTTGGGC
CTCCTGGAACTGGAAAAACTCTTTTGGCAAAGGCACTTGCGACAGAAGCTGGAGCAAATT
TTATCAGCATAACCGGTTCTAGTCTCACGTCGAAGTGGTTTGGAGACGCTGAGAAGCTCA
CCAAAGCCCTTTTCTCGTTTGCAAGTCGGCTAGCTCCTGTTATCATATTTGTGGATGAGG
TTGACAGCTTACTTGGTGCAAGGGGTGGTGCAATGGAACATGAAGCAACGAGAAGGATGC
GCAATGAATTTATGGCAGCTTGGGATGGTCTAAGGTCCAAAGATAGTCAAAGGATCCTTA
TTCTTGGTGCAACGAATCGTCCGTTCGATCTAGATGACGCTGTAATACGGCGTTTGCCTA
GGAGGATATACGTCGACCTTCCGGATGCGCAGAATAGGATGAAAATTCTCAAGATTTTAC
TTGCCAAAGAAAACCTAGAATCTGAATTTGGATTCGACGAACTAGCCAATGCAACAGAAG
GTTACTCTGGGAGTGATTTGAAGAACCTATGCGTAGCTGCAGCGTACAGGCCAGTTCATG
AACTGCTAGAAGAAGAAAAGAAGGGGTCTGCGGGCAGTACGAAAACTTCTTTAAGGTCCT
TGAAGCTGGATGACTTTGTCCAAGCAAAAGCCAAGGTGAGCCCGTCCGTTTCTTTCGATG
CCACGAGCATGAACGAGCTAAGAAAATGGAACGAACAGTACGGCGAAGGCGGCAGCAGGA
GCAAGTCGCCGTTCGGGTTCGGCACCTAACATGATTCCGGTAACGATTTTGCCACTGTAT
CACTTGTAGTACCAAATGTGCCCTGATTTAGCCATAGGGAGTCAGATCAGCGATGGCGCT
ATTTCTTTTCAGCTTCAATGCCGGCCCTTTTGCCTGTAGCGGCTACTCTGCTCCTTCCTC
CGGTTTTTGGTACTCACCTAGAGCCTCTTTGAGCGGTGCTATGGTGGCCCTGTATCGATA
GGCAGATGCCTCACGAACACCGAAGTTTCCTGAGCCATAGCAACTGGGTTGCCCGTTTCT
AATGTTGTACTGTTGCCGTGTCCCAGCGGAGGCCTGACCAAACTGTACATAGAGGTACAG
GAATTTTGTACCAAGAACAGCCGACGGTGTATCGTCTCTGAAATAAATCACATGTTCATG
ATTTGATAATGGTCTTGTGCGCAGTTAGCTGTTGAAGAGTAAGCCAGATGCTTTATCTTT
TTGTATGAGTTGGCAGATTCGTTTTTATGTCTCATGTTCCACACCTCAATCAATCACTTA
TGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12160.1	974	2e-164	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi1g45297.1	982	2e-167
Arabidopsis v10	AT1G50140.1	1003	9e-152	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:18569921-18578663 REVERSE LENGTH=1003