- Probe CUST_23051_PI390587928
- Source Contig U35_3952
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23051_PI390587928 | Hv_44K_v2 | GAATTTTGTACCAAGAACAGCCGACAGTGTATCGTCTCTGAAATAAATCACATGTTCATG | 458 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.359 | 1.439 | 1.068 | 0.838 | 0.352 | 0.382 |
| Raw | 3355.227 | 5484.777 | 3640.490 | 4573.873 | 658.760 | 780.033 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_23279.1 | 689 | 7e-23 | 243 - 302 | 98 | 59 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_23278.1 | 359 | 7e-23 | 10 - 69 | 98 | 59 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_31830.1 | 434 | 3e-22 | 28 - 86 | 98 | 58 / 59 | minus | ABC09080 ABC09081 ABC09082 |
| MLOC | AK355707 | 766 | 9e-22 | 682 - 739 | 98 | 57 / 58 | plus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_25733.1 | 302 | 9e-22 | 160 - 217 | 98 | 57 / 58 | plus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_45880.1 | 374 | 3e-21 | 151 - 210 | 97 | 58 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| JLOC1 | JLOC1_16089.1 | 456 | 4e-23 | 295 - 354 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_17533.1 | 347 | 5e-22 | 159 - 216 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC09083 | 539 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09081 | 538 | 3e-25 | 336 - 395 | 100 | 60 / 60 | plus | ABC09081 |
| Harvest21 | ABC09080 | 1284 | 1e-23 | 1201 - 1260 | 98 | 59 / 60 | plus | ABC09080 |
| Harvest21 | ABC09082 | 507 | 2e-22 | 7 - 64 | 98 | 57 / 58 | minus | ABC09082 |
| Harvest35 | U35_3952 | 539 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3951 | 1403 | 1e-23 | 1201 - 1260 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_3953 | 507 | 2e-22 | 444 - 501 | 98 | 57 / 58 | plus |
Contig Sequence (539 bp)
>U35_3952 539 Hv_44K_v2 GCACGAGGATGAACTGCTAGAAGAAGAAAAGAAGGGGTCTGCGGGCAGTACGAAAACTTC TTTAAGGTCCTTGAAGCTGGATGACTTTGTCCAAGCAAAAGCCAAGGTGAGCCCGTCCGT TTCTTTCGACGCCACGAGCATGAACGAGCTAAGAAAATGGAACGAACAGTACGGCGAAGG CGGCAGCAGGAGCAAGTCGCCGTTCGGGTTCGGCACCTAACATGATTCCGCTTCAATGCC GGCCCTTTTGCCTGTAGCGGCCACTCTGCTCCTTCCTCCGGTTTTGGGTACTCACCTAGA GCCTCTTTGAGCGGTGCTATGGTGGCCCTGTATCGATAGGCAGATGCCTGACGAACACCG AAGTTTCCTGAGCCATAGCAACTGGGTCGCCCGTTTCTAATGTTGTACTGTTGCCGTGTC CCAGCGGAGGCCTGACCAAACTGTACATAGAGGTACAGGAATTTTGTACCAAGAACAGCC GACAGTGTATCGTCTCTGAAATAAATCACATGTTCATGATTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_3952 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |