- Probe CUST_23050_PI390587928
- Source Contig U35_3953
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23050_PI390587928 | Hv_44K_v2 | TGTACCAAGAACAGCCGACAGTGTACCGTCTCTGAAATAAATCACATGTTCATGATTTGA | 447 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.434 | 1.454 | 1.095 | 0.893 | 0.361 | 0.457 |
| Raw | 3115.580 | 4893.593 | 3279.227 | 4249.277 | 587.965 | 821.977 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355707 | 766 | 2e-24 | 686 - 745 | 100 | 60 / 60 | plus | ABC09080 ABC09081 ABC09082 |
| MLOC | AK249789.1 | 1642 | 2e-24 | 1580 - 1639 | 100 | 60 / 60 | plus | ABC08786 ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_31830.1 | 434 | 2e-24 | 22 - 81 | 100 | 60 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_25733.1 | 302 | 2e-24 | 164 - 223 | 100 | 60 / 60 | plus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_23279.1 | 689 | 2e-24 | 237 - 296 | 100 | 60 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_23278.1 | 359 | 2e-24 | 4 - 63 | 100 | 60 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| MLOC | MLOC_45880.1 | 374 | 7e-23 | 145 - 204 | 98 | 59 / 60 | minus | ABC09080 ABC09081 ABC09082 |
| JLOC1 | JLOC1_17533.1 | 347 | 8e-25 | 163 - 222 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_16089.1 | 456 | 8e-25 | 301 - 360 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09082 | 507 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | ABC09082 |
| Harvest21 | ABC09081 | 538 | 1e-23 | 342 - 401 | 98 | 59 / 60 | plus | ABC09081 |
| Harvest21 | ABC09083 | 539 | 2e-22 | 465 - 522 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC09080 | 1284 | 6e-22 | 1207 - 1266 | 97 | 58 / 60 | plus | ABC09080 |
| Harvest35 | U35_3953 | 507 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3952 | 539 | 2e-22 | 465 - 522 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_3951 | 1403 | 6e-22 | 1207 - 1266 | 97 | 58 / 60 | plus |
Contig Sequence (507 bp)
>U35_3953 507 Hv_44K_v2 GCACGAGGCTTTCTCTTAGGGGTCTGCGGGCAGTACGAAAACTTCTTTAAGGTCCTTAAA GCTGGATGACTTTGTCCAAGCGAAAGCCAAGGTGAGCCCATCCGTTGCTTTCGACGCCAC GAGCATGAACGAGCTAAGAAAATGGAACGAACAGTACGGCGAAGGCGGCAGCAGGAGCAA GTCGCCGTTCGGGTTCGGCACCTAACATGATTCCGCTTCGATGCCGGCCCTTTTGCTTGT AGCGGCCACTCTGCTCCTTCCTCTGGTTTTTGGTACTCACCTAGAGCCTCTTCGAGCGGT GCTATGGTGGCCCTGTATCGATAGGCAGACGCCTGACGAACACCGAAGTTTCCTGAGCCA CAGCAACTGGGTCGCCCGTTTCTAATGTTGTACTGTTGTCGTGTCCCAGCGGAGGCCTGA CCAAACTATACATAGGTACAACTATTTTGTACCAAGAACAGCCGACAGTGTACCGTCTCT GAAATAAATCACATGTTCATGATTTGA
Homology of Contig U35_3953 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |