barSeed - Barley Seed Development Database

Probe CUST_23048_PI390587928

Source Contig U35_3955

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23048_PI390587928	Hv_44K_v2	CGATGTGCTGATAGCTTCAGAAGGATGTATTAATATAAAGATTTGATTTTTGTTCGGCCA	1416	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359452	1940	2e-24	1819 - 1878	100	60 / 60	plus	ABC10035
MLOC	MLOC_20767.2	1480	2e-24	1407 - 1466	100	60 / 60	plus	ABC10035
JLOC1	JLOC1_14396.2	2328	8e-25	2149 - 2208	100	60 / 60	plus
JLOC1	JLOC1_14396.1	1075	8e-25	896 - 955	100	60 / 60	plus
Harvest21	ABC10035	657	3e-25	53 - 112	100	60 / 60	minus	ABC10035
Harvest35	U35_3955	1528	3e-25	1417 - 1476	100	60 / 60	plus

Contig Sequence (1528 bp)

>U35_3955 1528 Hv_44K_v2
AGCTGTAAAACAGATGATGCCTTAGAATTGTGCTACTGTGTAGTCAAAATAAATGCAACT
ATACAAGCAAAGCTGGCACCTAATGGTTGTGCAGATCTGCATCAGGTTAGGCACTGTTAC
TATGGGTGTTGCAGGCCTGCATCACATATAACTTTAGATTTTAGAGTGGGTGCTAACTTC
AATAACTTACTGTGAGTTTACATGTACATTTTATGGTGATATCTCAACCAACATGTGGAA
CATTTATAACAGGTATTTTGAAAAATAAATATATCATCTACCGTAGTGGAAAGCCTCCAA
TCCCAACAAATAAAATAAAATACCTCACTGCTGTAACACTTACAAATGGTGTATGAATTC
TGATGCTATGGAAACTCTGTTATTTCACTGTTGCTGTTGAAGTTCTCATAGTAATTTTGG
TATCCCCAATCTTGTTTCAACATGAAGTATCTCTTGTTTGTTAATGTGCATAATTTTCAG
TCACCTGGACTTATTTTGCTTCACGCGACAGATGGTACTTTAGCATTACATTGTTCAATT
AAGATCAGACATGTTGTCGTTTTGGTATACTCCCATTCTACAAATATTATTAAGAAAATG
ACAAATATTTCAGGTATGGGATCTAGCAACGTTGCAGTGCATACAGACTCTTTCTGATCA
TACGAATGTAGTTATGTCTCTACTATGCTGGGATCAGTTTCTGTTATCTTGTTCTTTGGA
TCAAACAATAAAAGTTAGTCTCAATCCTTGTCTCCTTGTTATCGAATGATTTGTTCTTAC
ATTCCAATTACATATTTATCCTTTTCAATCAATTCATACTTCTAAGTTCTATTTTTCTTA
GGTCTGGGCAGCTACAGAAAGTGGAAACTTAGAAGTAACATATACACACAAAGAGGAGAA
TGGTGCACTTGCTCTTACTGGCATGCCTGATGCACAATCAAAACCTGTGCTAGTATGTTC
ATTAAATGACAACACTGTCCGACTCTATGACCTGCCATCGTTCAGTGATAGGGGAAGAAT
ATTCTCCAAGCAGGAAATTAGGGCAATACAAACTGGTCCTGGTGGTTTATTTTTCACTGG
GGATGGAACCGGTGAGCTGAAGGTTTGGCAATGGATTATTGATGCCTCCCAAACCTGATG
GATATAGTGTACTCTAGATTAGTTTCCCAATGTATGTGATGCGGGATTTCTCAAGGATAC
ACATAATGAGTTGAGGTGTGGTTGGTGATCAGTTCATTTTTCGGTTATATCCTACATTTA
TTCCCCTGGATCGGCTTGCAGTTAGAATACATGCAGAGGGCCCATGTAGTATCAGTATGA
ACGCTAGTGTATTTCTGGAATGGGTTCGATGTCGGGAGAATAATTCCTTGTAATTTGTAA
AGCATCGGAACATGGGAATGTCTCATAGCTTTTCTCCGATGTGCTGATAGCTTCAGAAGG
ATGTATTAATATAAAGATTTGATTTTTGTTCGGCCAAAAAAAAAAAAAAAAACTTGAGAT
TTTCTTGTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45480.4	247	3e-79	protein\|nucleic acid binding protein, putative, expressed
Brachypodium v1_2	Bradi3g51650.1	433	6e-81
Arabidopsis v10	AT5G51980.2	443	8e-58	Transducin/WD40 repeat-like superfamily protein \| chr5:21113650-21115902 REVERSE LENGTH=443