barSeed - Barley Seed Development Database

Probe CUST_23039_PI390587928

Source Contig U35_3965

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23039_PI390587928	Hv_44K_v2	GTTGTCATTTTGTCTTTTTTGCCATGGGCTCCTCGAATGTCCGAACTTCACCATAAAAAA	1516	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.193	1.623	1.116	0.720	0.299	0.276
Raw	921.437	995.994	654.669	650.713	96.735	97.571

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38383.1	1171	9e-22	40 - 94	100	55 / 55	minus	ABC09273
JLOC1	JLOC1_24951.2	857	5e-22	764 - 818	100	55 / 55	plus
Harvest21	ABC09273	1587	3e-25	1517 - 1576	100	60 / 60	plus	ABC09273
Harvest35	U35_3965	1587	3e-25	1517 - 1576	100	60 / 60	plus

Contig Sequence (1587 bp)

>U35_3965 1587 Hv_44K_v2
GGCTTGCAGGCCCCAATGGCGAGCCACGAAACCCTAGACCTGTCCCCTGCCGCTTCCTCC
AAGAAGAAGAAGAAGCACTCGAAGAAGCGCAAGGCCATCGAAGTGACTGTAGATGCCTCC
TTTCCTGGCGCCGCCGCCCCCGTCGTCGGCTACTTCCCGACGGGCTACGACCCCCTCGCG
GCCGCAGACCCCCCACGTGCGCGTTTGTTCCGCCACGAGAAGCACCATAACCGCGTCGAG
CTAGTGGTCGACGCCCCTGGTGGAGGCCCCGACTTCGTCGGCCGGAGCTACGCCGGCGAG
GCCGCTGCACCGCAGCTCTGCGGCTACGCCCTCGGCGTCCTCGACAAGGCCACCGGCACC
CTCAAGATTGTCCCCATCGCCTCTAACAAGATTTTGAGGCTAGAGCCACACTTTGAGGTG
CAGCAACCGGCCCATTCACAACAGTCAGCAGCAGAAGCATGTTCTTCTGTAGCAGATACT
GAATTAAACAGACAAGATCTTACCCAGGCTTATGGGACCAAGAAAGATAAGGATAAGGAT
AATAAGTGGAAGTCACTAAAAGAACAAAGGAATGACCCTTCTGCTTATTTGGACCTTGAT
CTTGGAGAGTCCAAGACCGCAGATGCCACTGATAGTCAGGCATCAATGGAAGTTCGCAAC
ATTCCACCTTATGATCCTGCTGCGGATACATCTGAAAAGGCATATCTTTTTGATGAGATC
ATTCCAAAAAATATACGGCCACACCTTCTAGACATTGTGGGACACTTCGAATCGGGAGAA
TTTGGTTTGAAAGGCTATGGGAGTTTTGTCTCCAATCGTGTGAATAAGTTACATGAGCTT
CAGGGTGAAGATCAGGAAAGGCTTGCTTGGATACTATCCTACATCACACATCTCCTGTCC
TTGTTGGCGCGCAACAGCTCCATGTCCAAGCAGAAAAGAAAGGAAAAAGACCAGACCATC
CGTGGACCAATGATCCCGCAGGCCGTGCACCGCAAGTTGTTGCTGATGTTCACGGAGCCA
GGGTCTTCTTCCTTGTCGACAGAAAAATACGAGCTTCTGATCAATTACATTTTAGTGCTC
ACACTTTTTGCTGATGACTTCAGATCTGAACCTACTGATATATGTGCAGACTTGAAAATG
AACCGCCAGATGCTTAAACCGTATTATGACCAGCTGGGATGCAAGTCCGTGTCAACAGGT
GCTTTTAAACCCTTTTTTATGACACTTCCAGCCCCCCTCAAGTTCCCACAACAAGTCACA
AGGAGAAGGCGGCGAAAATAATCATCTCAGTACTGGTTTCCATTTGATAGGAAAGGTATG
CATTGCCACTGTCGAAGCTGTGTGCCCTCAGCTCAGTTTCACCATTGTTGCTTGGGAATT
GCTACAAGAGAGGAACCATATTACTGATATATAATTTGCTTGCTACTGGAATTTGGTTTT
TGATGCTACATCTTGGTATCGACCTTGCTGTGGGTTGAGTCGTCATTTGCTTGTATTTTT
CTTTCTTTCGGAAAGTGTTGTCATTTTGTCTTTTTTGCCATGGGCTCCTCGAATGTCCGA
ACTTCACCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_3965 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g40090.2	496	0.0	protein\|A49-like RNA polymerase I associated factor family protein, expressed
Brachypodium v1_2	Bradi4g13720.1	473	0.0
Arabidopsis v10	None