barSeed - Barley Seed Development Database

Probe CUST_23038_PI390587928

Source Contig U35_3966

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23038_PI390587928	Hv_44K_v2	AGCCATTCTATGTTAGACGCTCGTTGTCCATTGTGATTTCGTAGATGTAATATACGTACA	739	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.807	1.946	1.112	0.787	0.332	0.407
Raw	826.547	1414.870	692.118	785.999	114.341	153.448

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_1479.2	1506	4e-23	1309 - 1368	98	59 / 60	plus
JLOC1	JLOC1_1479.1	1515	4e-23	1318 - 1377	98	59 / 60	plus
Harvest21	ABC09529	795	3e-25	701 - 760	100	60 / 60	plus	ABC09529
Harvest35	U35_3966	844	3e-25	740 - 799	100	60 / 60	plus

Contig Sequence (844 bp)

>U35_3966 844 Hv_44K_v2
CGAATTGGACCCCGCGCGGTACGAGGACGACGAGGCGTATGCGCGGGCCCTGCAGGATGC
CGAGGAGCGCGAGGTCGCCCAGCGGCTCATGGCGCTCGCTGGGATCACTGATTTAGGGGA
AGAGATGGAGCATGATGAGGAAGATGAGGAAGATGGGGATAGCGCACAGGATGCATGGGA
AGACGTTGATCCAGACGAATACTCATATGAGGAGCTGGTTGCATTGGGTGAAGTGGTCGG
TACAGAAAGCAGAGGCGTTTCTGCAGATACTCTGGCTTCATTACCTTCAGTAACTTACCA
AGCACAAGATAAGCAAGAGAGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGA
GGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCACTCATATCATTCTGACTGCATAAA
CCAGTGGCTGCAGTTAAACAAGGTATGCCCTATGTGCAGTGCAGAAGTTTCTACCTCGGA
CAACAACGAGGCATGACATTCTGTTGTGGTCGTCATCATGGACGCATGGTAGTGGGAAGA
AATAGCGACAGCATATATTTTCTGATGCCTGTGAGGTTTAAGCACTAGGAGCTGTTGTAT
TGTCCAAAGAAACTAGCAAACAAGCCTCAAGTTTGTCTCCCTGCTTTCTAGCCCAGCAGA
CTCAGACATATGTACTTCTGGACTTTCTTCACACTGATGCTGCTTTGTGATTCATTGATG
TAAAATAGTTTAAATTTATAGCCATTCTATGTTAGACGCTCGTTGTCCATTGTGATTTCG
TAGATGTAATATACGTACAATAATTATATTTATAGTCATTCTTTTACAAAAAAAAAAAAA
AAAA

Homology of Contig U35_3966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43480.1	306	2e-82	protein\|zinc finger, C3HC4 type family protein, expressed
Brachypodium v1_2	Bradi3g42410.2	302	3e-86
Arabidopsis v10	AT3G19910.1	340	1e-60	RING/U-box superfamily protein \| chr3:6926497-6929324 FORWARD LENGTH=340