barSeed - Barley Seed Development Database

Probe CUST_23035_PI390587928

Source Contig U35_3970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23035_PI390587928	Hv_44K_v2	AAAGTCGGCAGTCCTGTGGCCCTTATGACTTTTGGAAGCTATGCTGAATTTACGATGGTT	1276	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.561	0.613	1.185	1.656	1.002	0.985
Raw	44.245	64.222	126.677	271.166	58.733	64.346

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363561	2627	2e-24	1567 - 1626	100	60 / 60	plus	ABC09434
MLOC	MLOC_10154.2	879	2e-24	770 - 829	100	60 / 60	minus	ABC09434
MLOC	MLOC_10154.1	1287	2e-24	1017 - 1076	100	60 / 60	minus	ABC09434
JLOC1	JLOC1_6621.1	1417	8e-25	196 - 255	100	60 / 60	plus
Harvest21	ABC09179	1340	3e-25	1277 - 1336	100	60 / 60	plus
Harvest35	U35_3970	1340	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1340 bp)

>U35_3970 1340 Hv_44K_v2
GAGCAGACGGGACGACCCTGTCTCCCCCAGCAGACAGCTCCCGCCTCGGCAGCTCCGCAG
GCCGGCCGCGCTCTCCATACCCACCCCGTCCCGCTCCGTGCCTCTCTCGCTCGCCTGAAG
CTGGTCGGTCTGCCCTCACCGCGCCGGCGAGATGGAGCTGAAGCCCGGCATGTCGGCCCT
CGTCACCGGCGGCGCCTCCGGCATCGGGAAAGCGCTCTGCATCGCTTTTGCACAAAAGGG
TCTATTTGTGACTGTGGTCGATTTCTCTGAACAAAATGGAAGAGAAGTTACTTCGCTAGT
TCAAAAGGAAAACAAAAAGTTTCATGGAGATCTTGGAGTACCGTCTGCCATATTCGTCAA
GTGTGATGTTTCTGTTGAAGGTGATCTAGCTGCTGCTTTTGCGAAACATGTAGACACATA
TGGTGGATTAGATATCTGCATCAATTGTGCTGGAATTGCTAACCTAACATTAGTTTATGA
TGATATATCCGACGGAACTAAGACATGGAGGCATGCCATAAATGTGAACTTTGTCGCTGT
TATTGATGGTACTCGCATTGCAAGTCAAATAATGCGATCCCGGAAGAAGCCTGGTGTCAT
AATCAATATTGGTTCAGCTGCGGGCCTTTATCCTATGTTCGCCGATCCCATATATACCGG
GACAAAAGGTGGTGTTGTTATGTTTACTCGATCACTTGCTCCATTGAAACGCCATGGTGT
TCGTGTCAATGTGCTCTGCCCCGAGTTTGTTCAAACTAATATGGCTGAGCAAATAAATCA
GAAAATAGTACAGGCAACTGGTGGATTCTTGGAGATGGATGACATCATTAATGGTGCATT
TGAACTTATAAAAGATGAGAGCAAGGCTGGTGCTTGCCTTTGGATAACTAAGCGGAGAGG
GATGGAATACTGGCCATCAGCAGAAGAACAAAGAAAATATCTGTTGAATTATACCAAATC
AAAAAGAACAGTAACAAAGAATGTATTTCCTAGCATCCAAACCCCTGAGTTTTATGAGAA
GATAGTTGTTCACACACTCAGCCATAATTTCCGCAATGCTACAAGACTTGATCGTGTGCG
ATTGAGATTGCCCATTGAACCACAAAGTGCGCTAGTTAAAATAATATATGCTGGCGTAAA
TGCTAGTGATGTAAACTTCAGCTCCGGGCGGTATTTCAGTGGCAGTGCTAAAGAAACTGC
TGCACGCCTTCCGTTCGATGCTGGTTTTGAGGCTGTGGGAATTGTTGCTTCTGTTGGAGA
TGCAGTGAGCCATATCAAAGTCGGCAGTCCTGTGGCCCTTATGACTTTTGGAAGCTATGC
TGAATTTACGATGGTTCCAG

Homology of Contig U35_3970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28570.3	565	0.0	protein\|zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed
Brachypodium v1_2	Bradi4g32250.1	635	0.0
Arabidopsis v10	AT1G49670.2	652	6e-169	\| Symbols: NQR \| ARP protein (REF) \| chr1:18381591-18386021 REVERSE LENGTH=652