barSeed - Barley Seed Development Database

Probe CUST_23028_PI390587928

Source Contig U35_39802

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23028_PI390587928	Hv_44K_v2	ATCATGCAACCTTTGTTTCCCTCTCTTCCCTTACGCCTAGAGAAAATGCAACAAGAAGGC	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14326.1	2346	7e-23	280 - 339	98	59 / 60	plus	ABC18155
MLOC	MLOC_14328.1	4700	7e-23	238 - 297	98	59 / 60	plus	ABC18155
JLOC1	JLOC1_9781.2	5575	4e-23	1626 - 1685	98	59 / 60	plus
Harvest21	ABC36011	635	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_39802	635	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_39802 635 Hv_44K_v2
GAAAGAAGGCAATCAACTGCAAGTGGGTATACAATGTGAAGTAGAATGCAGAAGGAAATG
TTGAAAGGTACAAAGCAAGGCTTGTGGTGAGGTGGTACAACCAGACATTGACTATGATGA
GACCTTTGCTCCAGTAGCAAAGATGAACACCGCGAGGATTCTGATATCATATGTAGCAAA
TTCAGGTGGCCTTTACACAAACTTGATGTGAAGAATGCCTTCTTGCATGGGGGCTTGTAG
GAGGAGGTATACATGGAGATTCCACCAGCGTTCTCGCTTCTGAAATGGCAACTCTAGTTT
ATGTCGCAACTACAATCTTGGTGAGTTCCCTCCTCTGTTTCCATTGGTTTGCTCGTATAG
TCTCTTTTATGGAACATGGCAATGATCTATCATGGAGGTGGTGAAGGTAAAATCGATGAT
GAAACTTAGGGGAGTTGATCACCGGAGTAGACCTTTGTTTCAACCATAAGAACACCTAGT
CATCCCAATTCTTTTGTTATTTGGATTGCGATTCATTATTAGAATCTTTTTATGTGTAAA
GATCATGACATGCCTTCATCCATTTCTGATCATGCAACCTTTGTTTCCCTCTCTTCCCTT
ACGCCTAGAGAAAATGCAACAAGAAGGCAACCCCT

Homology of Contig U35_39802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None