barSeed - Barley Seed Development Database

Probe CUST_23020_PI390587928

Source Contig U35_15852

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23020_PI390587928	Hv_44K_v2	TGAGAAACTGTAATAAATTTTTGTCGCTCTTGACAGGACCTTAAACAAATGCTGAGGTAG	1243	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.622	0.744	0.893	1.335	1.049	1.270
Raw	5338.673	9994.563	10558.450	23875.733	6772.657	8922.657

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63716.3	1720	2e-24	1615 - 1674	100	60 / 60	plus	ABC04193 ABC48161
MLOC	MLOC_63716.1	1757	2e-24	1576 - 1635	100	60 / 60	plus	ABC04193 ABC48161
Harvest21	ABC04193	1462	3e-25	1244 - 1303	100	60 / 60	plus	ABC04193
Harvest21	ABC48161	303	1e-23	133 - 192	98	59 / 60	minus	ABC48161
Harvest35	U35_15852	1434	3e-25	1244 - 1303	100	60 / 60	plus

Contig Sequence (1434 bp)

>U35_15852 1434 Hv_44K_v2
GAGCAGAGAGAAGGCAAAAGCTGCTCTTCTCTTCTTTTGCTTTTTCCCTTGGAGACGCCA
ACTCCCTCTTCTCCCTTTTATTGCCCCCATTCCTTCTCTCTCTCTCTCTGTGACGGCACT
TGTGACAGAAGAGAGGGGTGCGTCGTCTTGCTCGCGGTGGTGCCGGTGCTGGGCGGTTGC
ATCCACCCGTCAGCCAAGTCAGCCATGGCGCCGGACCACGGCTCCAAGGTCGACATCTCC
TTCGCCGGCCGCTTCACAGCCAGCGCCATCGCCGCCTGCTTCGCCGAGATCACCACAATC
CCCCTCGACACGGCCAAGGTCAGGCTGCAGCTGCAGAAGAAGGCCGTCGCCGGGGATCTC
GCTGGGCCCAAGTACCGCGGTCTGCTCGGCACTGCCGCCACCATCGCCAAGGAGGAAGGC
GCCGCCGCGCTCTGGAAGGGCATCGTCCCTGGCCTCCACCGCCAGTGCATCTACGGGGGT
CTCCGCATTGGTCTCTATGAACCCGTCAAAGCCTTCTATGTTGGTGAGAACCATGTTGGG
GATGTACCTTTGTCCAAGAAGATAGCCGCTGGCTTCACCACTGGTGCTCTTGCAATTGCT
GTGGCCAACCCCACTGACCTTGTCAAAGTCAGGCTTCAGTCCGAGGGGAAGCTGGCACCT
GGTGTGCCGCGCCGTTATACTGGGGCAATGGATGCTTATGCCAAGATTGTTCGCCAGGAA
GGGGTTGCTGCTCTGTGGACTGGCATTGGTCCGAATGTTGCACGTAACGCCATCATTAAC
GCTGCTGAGTTGGCCAGTTATGATCAAGTGAAGCAGTCCATTTTGAAACTTCCTGGGTTC
AAAGATGACGTGGTCACTCATATCTTGTCTGGTTTGGGCGCTGGCTTCTTTGCTGTCTGT
GTTGGTTCTCCAGTCGATGTGGTTAAGTCAAGAATGATGGGTGACTCTGCCTACAAGAAC
ACTATTGATTGTTTTGTGAAGACCCTAAAGAATGATGGACCTCTGGCATTTTACAAAGGC
TTCCTTCCAAACTTTGCTAGACTGGGATCATGGAACGTGATTATGTTCTTGACACTGGAG
CAGGTTCAGAAGGCCTTTGTGAGAAAGCCTGCAAATTAGCGATGAGATGATATGGTTTTG
TAGAGGGTGGTATACAACAACAATGTGCACATTTGTTTTCTCCTACATAAGGCGTTAACC
CTTGGGAGTTGAGGTACAAAGGACAAATTTGAGACCTCAACCGTGAGAAACTGTAATAAA
TTTTTGTCGCTCTTGACAGGACCTTAAACAAATGCTGAGGTAGTTCGGAGATCTCAAAGT
GTTGCTAAATTTGTGTTGGATGGATGAACATTGGCTGCAGCAGATCTTTTGTGTGATGAT
GAGCCAGGAAGGCTACAATGCCTTTGCTTGGTCTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g48040.1	302	0.0	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi4g09060.1	306	0.0
Arabidopsis v10	AT3G54110.1	306	6e-155	\| Symbols: ATPUMP1, UCP, PUMP1, ATUCP1, UCP1 \| plant uncoupling mitochondrial protein 1 \| chr3:20038890-20040996 FORWARD LENGTH=306