barSeed - Barley Seed Development Database

Probe CUST_23015_PI390587928

Source Contig U35_15857

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23015_PI390587928	Hv_44K_v2	ATGGCTAAAGATGGGATACATGCTGTGTTGATGGTTTTTTCTGCTACATCTCGATTTTCT	526	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.312	0.298	0.833	1.499	1.360	1.848
Raw	131.536	186.059	491.669	1370.472	434.291	650.693

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38808.1	1454	2e-24	611 - 670	100	60 / 60	plus	ABC04229
JLOC1	JLOC1_25263.1	1739	8e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC04229	1438	3e-25	488 - 547	100	60 / 60	plus	ABC04229
Harvest21	ABC04228	841	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_15857	589	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_15856	1712	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_15857 589 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGTGGGAACTCAGTTCCAAAATAAAAAGAAGCCCCGCACCT
CCTCCTCCTCGCCAACACGCCAAGCGACCAAATCGCCGCCGCAGACGCAGCCGCCTAGGG
CTTCACCGCCGTCGCAGATCCCTCCTTCCGCCTGCTGCTGCGGGTCCTCCGTGTTCGTGA
CTGCTGTGTCGGCGCCGAGATAAATTTTCCTGCCGTCACTCAGATTTTGTGAGTGTTCGA
TATGGGTGGAAGCAACTATGATGACGACTGGGTGTTGCCCAGTGCTGACATCACTCTTGT
TCTTGTTGGAAAACTTGGCTATGGCAAGAGTGCAACTGGCAATAGTATCCTTGGACGGGA
AGCATTTGTATCAGAATACTCTCATGCTAGTGTGACAAATACTTGTCAGATGGGAAGCAC
CATGCTGACGGATGGCCGCACCATCAATGTTATTGATACACCAGGATTATTTGACATGAC
CGTAACCCCTGAGGATGCTGGCAAAGAAATTGTTAAGTGCATGAACATGGCTAAAGATGG
GATACATGCTGTGTTGATGGTTTTTTCTGCTACATCTCGATTTTCTCGA

Homology of Contig U35_15857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35130.2	331	1e-63	protein\|AIG1, putative, expressed
Brachypodium v1_2	Bradi3g45870.4	298	1e-74
Arabidopsis v10	None