barSeed - Barley Seed Development Database

Probe CUST_23014_PI390587928

Source Contig U35_15858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23014_PI390587928	Hv_44K_v2	CCCTACGGTTGGCTAACAATATTATCGTGCATGGATAATAAATAACTATGTAATGGTGAA	286	GeneList: lightgreen MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.492	0.582	0.160	1.293	5.839	44.165
Raw	13.463	25.584	5.156	78.568	119.151	1013.170

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45395.2	465	2e-24	295 - 354	100	60 / 60	plus	ABC03902 ABC03903
MLOC	MLOC_58649.1	468	2e-24	301 - 360	100	60 / 60	plus	ABC03902 ABC03903
MLOC	MLOC_45395.1	419	2e-24	95 - 154	100	60 / 60	minus	ABC03902 ABC03903
JLOC1	JLOC1_38125.1	538	8e-25	375 - 434	100	60 / 60	plus
JLOC1	JLOC1_29473.1	635	8e-25	386 - 445	100	60 / 60	plus
Harvest21	ABC03903	463	3e-25	276 - 335	100	60 / 60	plus	ABC03903
Harvest21	ABC03902	479	3e-25	287 - 346	100	60 / 60	plus	ABC03902
Harvest21	ABC44840	268	2e-22	124 - 181	98	57 / 58	plus
Harvest35	U35_15859	463	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_15858	479	3e-25	287 - 346	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_15858 479 Hv_44K_v2
GCAGAGAGGACATCTAAATAATTCTTCGGGTGAATAGTTAATTGAAGAACATGCGTTCCA
TGGAGGGAAGTGTACCGAAGTACCCGGAGCCTACCGAAGGGAGCATCGGAGCCAGCGGTG
CTAAAAGATCATGGCCGGAGGTGGTAGGGATGTCCGCGGAGAAGGCCAAAGAGATCATTC
TCCGGGACAAGCCCGATGCCCAGATAGAGGTCATCCCGGTCGATGCGATGGTCCCCCTGG
ACTTCAATCCCAACCGTATCTTCATTCTCGTTGCCGTCGCCAGGACCCCTACGGTTGGCT
AACAATATTATCGTGCATGGATAATAAATAACTATGTAATGGTGAAATAAAGACATGCTT
AGTATCAGCATATCATGGAATAACTTTCTGTATGGTATACTTATATTATGGAGGAATAAA
GACATGTTGAACATCAGCAAAAAAAAAAAAAAAAAAAATAAATAAGACAACAAGCTGGG

Homology of Contig U35_15858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None