- Probe CUST_23013_PI390587928
- Source Contig U35_15859
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23013_PI390587928 | Hv_44K_v2 | GCCGAGTATCAGCATATCATGTAAGAACTTTCTGTATGGTATACTTATATTATGGAGGAA | 345 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.794 | 1.292 | 0.644 | 1.017 | 1.948 | 20.760 |
| Raw | 4.880 | 13.217 | 4.629 | 13.861 | 9.979 | 123.717 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45395.2 | 465 | 2e-24 | 365 - 424 | 100 | 60 / 60 | plus | ABC03902 ABC03903 |
| MLOC | MLOC_45395.1 | 419 | 2e-24 | 25 - 84 | 100 | 60 / 60 | minus | ABC03902 ABC03903 |
| JLOC1 | JLOC1_29473.1 | 635 | 8e-25 | 456 - 515 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03903 | 463 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | ABC03903 |
| Harvest35 | U35_15859 | 463 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus |
Contig Sequence (463 bp)
>U35_15859 463 Hv_44K_v2 GAGGACATCTAAACAATTATTCAGAGTTCATTGAAGAACATGAGTTCCATGGAGGGAAGT GTACTGAAGTACCCAGAGCCTACCGAAGGGAGCATCGGGGCTAGCAGTGCTAAAACATCA TGGCCGGAGGTGGTCGGGATGTCCGCCGAGAAGGCCAAAGAGATCATCCTTCGGGACAAG CCCAATGCCCAGGTAGAGGTCATCCCGGTCGATGCGATGGTCCACCTGAACTTCGATCCC AACCGTGTCTTCGTTCTCGTTGCCGTCGCCAGGACCCCTACGGTTGGCTAACAATATTAT CGTGCATGGATAATAAATAACTATGTAATGGTGAAATAAAGACATGCCGAGTATCAGCAT ATCATGTAAGAACTTTCTGTATGGTATACTTATATTATGGAGGAATAAAGACATGTTGAA CATCAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_15859 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |