barSeed - Barley Seed Development Database

Probe CUST_23003_PI390587928

Source Contig U35_39813

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23003_PI390587928	Hv_44K_v2	TCTAACAGGTTGACCGGAGACATGTACCAGTCTTGATGATTTAATTTAGGTTAAAGAAGT	32	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373983	2094	2e-24	1898 - 1957	100	60 / 60	plus	None
MLOC	MLOC_54333.3	2730	2e-24	1272 - 1331	100	60 / 60	plus	ABC05048
MLOC	MLOC_54333.1	2239	2e-24	1563 - 1622	100	60 / 60	plus	ABC05048
JLOC1	JLOC1_34970.1	1872	8e-25	1099 - 1158	100	60 / 60	minus
JLOC1	JLOC1_34969.2	5711	8e-25	1191 - 1250	100	60 / 60	plus
JLOC1	JLOC1_34969.1	5891	8e-25	1371 - 1430	100	60 / 60	plus
Harvest35	U35_39813	816	3e-25	33 - 92	100	60 / 60	minus

Contig Sequence (816 bp)

>U35_39813 816 Hv_44K_v2
TTTTTTCTAAAATTTTTTTTTTTTTAAAAGGAACTTCTTTAACCTAAATTAAATCATCAA
GACTGGTACATGTCTCCGGTCAACCTGTTAGAAGGTGCACAAACATGACTCTTGTACCCC
AAATACAGACCTGAGGCAGCTATGTGTTCTCAGGCTTCAGTCTTTTGTCTAAATGCCCAC
TCGAAGGGTTCCCAGCAACAAGATGTTTGCTGGAACTCTGAGGAAATGTTTTTACAACAG
GTACATCTACTTTTGGATACGGTATTCGCGGGGCACCGTTTACCTGCCCAGGATGTCCGG
TCGCTTCAGATCTAATCGCCATGGAGTACTTCTCCTCTTTCATTCTACCGTACTGCACAA
GCTTACGCAGGCAATCACGGAATTCTGTCAACACACACCTTTCCTGCTCTGCATACAGTT
CTGACCGGTTCTGATCGGCAGCTACTGCTGGCGGAGCAACAGCATTTTGAGAAGTTGCAA
ACATAGCATCTTGTTCATCACACATCAATGCTAGTGTTCCAGGAGACATTGGTCTACTGG
ACTTCTGGTCATCATTGCAATCAGGTCTGGAATCATCTAGTGATGCCTTGCCCATATCAG
TTCCTACACTTGAACGATCATCAATTGATGTTTTTCGATGATTTTGATCTTGAGTTTTGC
CTTCTCTATCATGGTTTGTGGATGCTAGGGAACCTCCCGTTCCATCTTCCTTCTCTGCAA
CCTTCTCTTCCTGGATTTTCCGACCAGTATATGCCTTAGCAGCCTGTCCTGATACTGTCA
CCAAAAGTTTACATAGCTCCTTTACATCCCCTGGCT

Homology of Contig U35_39813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55580.1	620	2e-98	protein\|tesmin/TSO1-like CXC domain containing protein, expressed
Brachypodium v1_2	Bradi2g50540.2	599	4e-113
Arabidopsis v10	None