- Probe CUST_23002_PI390587928
- Source Contig U35_39816
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23002_PI390587928 | Hv_44K_v2 | CAATCAACACATGAGAACCTTCATGGTGGTAGTCAAATTCAGTGCACTGGAGTGAGCCAT | 428 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.413 | 1.080 | 1.447 | 1.087 | 0.636 | 0.460 |
| Raw | 53.127 | 62.410 | 75.708 | 84.542 | 18.483 | 14.269 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51044.5 | 2029 | 2e-24 | 409 - 468 | 100 | 60 / 60 | plus | ABC11862 |
| MLOC | MLOC_51044.1 | 11237 | 2e-24 | 10362 - 10421 | 100 | 60 / 60 | plus | ABC11862 |
| MLOC | MLOC_51044.4 | 10699 | 2e-24 | 9233 - 9292 | 100 | 60 / 60 | plus | ABC11862 |
| MLOC | MLOC_51044.3 | 11664 | 2e-24 | 10100 - 10159 | 100 | 60 / 60 | plus | ABC11862 |
| JLOC1 | JLOC1_32572.3 | 11796 | 8e-25 | 10273 - 10332 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32572.1 | 11838 | 8e-25 | 10315 - 10374 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC36030 | 510 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39816 | 510 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus |
Contig Sequence (510 bp)
>U35_39816 510 Hv_44K_v2 GGATTGATCTTATTTTTGGGTATAAGCAGAGAGGAAAGGCAGCTGAAGATGCCGTCAATG TCTTCTATCACTACACATATGAAGGCAATGTTGACATAGATGCAGTATCAGATCCTACCA TGAAGGCTTCAATACTGGCACAGATCAATCACTTTGGCCAGACCCCCAAACAGTTATTCC AAAAAGCTCATCCACAGCGACGAACTGACAGGAAAGTTCCTCCTCATCCTCTACGGTACA GCAACTATCTTACACACCAAGAGATCCGCAAGACAGCATCTGCAGTGTCCCAGATCGTGA CCTACAATGACAAGATCCTAATTGCTGCATCAAACAGCTTGCTCAAGCCAGTTACTTACA GTGAGTACATCTCATGGGGATTTCCTGACCGCAGCTTGAGAATATTGACATACGATCAGG ATAGACTTCAATCAACACATGAGAACCTTCATGGTGGTAGTCAAATTCAGTGCACTGGAG TGAGCCATGATGGCAACATTCTCACCACAG
Homology of Contig U35_39816 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g53280.1 | 3583 | 9e-102 | protein|WD domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g08917.1 | 3567 | 4e-106 | |
| Arabidopsis v10 | AT4G02660.1 | 3527 | 2e-82 | Beige/BEACH domain ;WD domain, G-beta repeat protein | chr4:1159927-1173791 REVERSE LENGTH=3527 |