barSeed - Barley Seed Development Database

Probe CUST_22_PI390587928

Source Contig U35_7849

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22_PI390587928	Hv_44K_v2	AGCTGGACAGCGACACGAGGCGGGTGAAGTACAACATCATATCGGGCACGTCCATGTCAT	699	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365933	2664	2e-24	1620 - 1679	100	60 / 60	plus	ABC12029 ABC12030
MLOC	MLOC_58156.1	2817	2e-24	1777 - 1836	100	60 / 60	plus	ABC12029 ABC12030
JLOC1	JLOC1_37755.1	2823	8e-25	1726 - 1785	100	60 / 60	plus
Harvest21	ABC16824	744	3e-25	500 - 559	100	60 / 60	plus
Harvest35	U35_7849	944	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (944 bp)

>U35_7849 944 Hv_44K_v2
TTTATAGCGACACGACCGCTGTGGGTGCGTTCCGCGCAGTCAGAAGGGGCATCGTCGTCT
CCGCCTCCGCCGGAAACTCCGGCCCCGGAGATTCCACCGCATGCAACATAGCGCCATGGT
TCTTGACGGTCGGTGCGTCCACCCTCAACCGCCAATTCCCGGGCGATGTCGTTCTCGGCA
ACGGCGAGACCTTCACGGGCACTACTCTCTACGCCGGCGAGCCGCTCGGCCCGACCAAGA
TACCACTGGTCTACGGAGGAGACGTGGGCTCCAAAGCGTGCGAAGAGGGGAAGCTGAACG
CCACCAAGGTCGCCGGGAAGATTGTTTTGTGTGAACCGGGTGTAAATGCCCGAGCAGCGA
AACCACTTGCCGTGAAGCTCGCCGGCGGCGCCGGAGCGATCCTCGCGAGCACACAGCCAT
TCGGCGAGCAGGCCCTCACCACCCCCCATGTCCACCCCGCCACGGCCGTGGCATTTGTGG
ACGGCGCCAAGATCTTCAAGTACATACGCGCGCAAGCTTCCCCTACCGCGACGATCATCT
TCCGTGGCACCGTGGTCGGCTCGACGCCTCCTTCCCCAAGAATGGCGGCCTTCTCGAGCC
GCGGGCCAAACTTGCGTGCGCCGGAGATCTTCAAGCCGGACGTGACCGCGCCGGGCGTGG
ACATCCTCGCGGCTTGGACAGGCGCCAACTCGCCCACGGAGCTGGACAGCGACACGAGGC
GGGTGAAGTACAACATCATATCGGGCACGTCCATGTCATGCCCGCACGTGAGCGGCATCG
CCGCGCTGCTCCGGCAGGCGAGGCCAGAGTGGAGCCCTGCGGCGATCAAGTCCGCGCTGA
TGACCACCGCGTACAACGTGGACAACACCGGCGGCGTCATCGGCGACATGTCCAGCGGCG
ACGCGTCCACGCCGTTCGCGCGAGGGGCCGGGCACATCGACCCC

Homology of Contig U35_7849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53860.1	783	6e-143	protein\|OsSub22 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi3g57130.1	781	2e-175
Arabidopsis v10	AT3G14067.1	777	7e-127	Subtilase family protein \| chr3:4658421-4660754 REVERSE LENGTH=777