barSeed - Barley Seed Development Database

Probe CUST_22998_PI390587928

Source Contig U35_15862

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22998_PI390587928	Hv_44K_v2	TTATTAGAGAGTCAGGCATGAATACACAAGGTGGAGATCGCCCTTTCTTTGATTTCCTGG	976	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367922	3194	2e-24	944 - 1003	100	60 / 60	plus	ABC07764 ABC07765
MLOC	AK365568	2958	2e-24	811 - 870	100	60 / 60	plus	ABC07764 ABC07765
MLOC	MLOC_19195.3	3154	2e-24	2004 - 2063	100	60 / 60	minus	ABC07764 ABC07765
MLOC	MLOC_19195.2	3240	2e-24	2207 - 2266	100	60 / 60	minus	ABC07764 ABC07765
JLOC1	JLOC1_13317.2	3225	8e-25	964 - 1023	100	60 / 60	plus
JLOC1	JLOC1_13317.1	2948	8e-25	988 - 1047	100	60 / 60	plus
Harvest21	ABC07764	986	3e-25	880 - 939	100	60 / 60	plus	ABC07764
Harvest35	U35_15862	1083	3e-25	977 - 1036	100	60 / 60	plus

Contig Sequence (1083 bp)

>U35_15862 1083 Hv_44K_v2
GCACCTTACTCTGCCCTTGCCCCTGCCCCGCCCCGCCGTCTTCCAGATTCAGATCCATCG
TCCATGCCGCTCGCTTCTCCACTTCTGTAAGCGCCTCTTCCTCCTCTCTCCTGTTCAGTC
CTCCCTCGCAAAACCGCGAGACAAGGACTCGCGGGAGCTCTCGCGCCGCCCCGCTCCGCC
GCCGTTCTCGCGGCATAGCGGTCGACCCGGGCGCACAATCCGCGCGCGCATCGCTCCGCC
GCAGCAGGGGCCATGTCGCAGCCGCTCGTCGTGAAGAAGGACGACGACTTAGACGAGGAA
GAGTACTACTCGCCGTTCCTCGGCATCGAGAAGGGTGCCGTCCTGCAGGAGGCCCGCGTC
TTCCACGACCCGCAGCTTGATGCGCGGCGATGCTGCCAGGTGATCACCAAGCTTCTATAT
CTGCTCAACCAGGGTGACACCTTTACCAAGGTAGAGGCCACAGAGGTATTCTTCGCTACG
ACCAAGTTGTTTCAGTCCAAGGATGCTGGACTTAGGAGGATGGTGTACCTCATGATCAAG
GAACTCTCGCCGTCAGCAGATGAGGTTATTATAGTGACAAGTTCCCTGATGAAGGATATG
AATAGCAAGACTGATATGTATCGTGCAAATGCTATTAGAGTTCTTTGCCGCATCATTGAC
TCAACTCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCAATTGTTGACAAGAACCCC
GTTGTTGCCAGTGCGGCTCTTGTTAGTGGCATTTACCTGCTTCAGACAAGTCCGGAAGTT
GTGAAGAGATGGAGCAATGAGGTTCAAGAGGCTGTACAATCCAGAGCCGCTCTTGTTCAG
TTTCATGCCCTTGCTCTTCTTCATCAAATTAGACAAAATGACCGGTTGGCTGTTAGCAAG
CTTGTCACTAGCCTGACAAGGGGATCAGTTCGCTCACCTCTGGCTCAGTGCCTACTTATT
CGGTATACTAGCCAGGTTATTAGAGAGTCAGGCATGAATACACAAGGTGGAGATCGCCCT
TTCTTTGATTTCCTGGAGTCATGTCTTCGGAACAAAGCAGAAATGGTCATACTCGAGAGT
ACT

Homology of Contig U35_15862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g10150.1	890	1e-165	protein\|coatomer subunit gamma-2, putative, expressed
Brachypodium v1_2	Bradi1g54510.1	889	2e-167
Arabidopsis v10	AT4G34450.1	886	1e-144	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative \| chr4:16471956-16476795 FORWARD LENGTH=886